runx1 (Danio rerio)
Runt

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00853 (Runt) IPR013524 ENSDARG00000087646 T319361_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Runx1
M08163_2.00 		Mus musculus
HRRCCACARVN
NBYTGTGGYYD		 ChIP-seq
Mathelier et al.(2014)
MA0002.2 		0.957 0.957
RUNX1
M09371_2.00 		Homo sapiens
NWAACCACARV
BYTGTGGTTWN		 Misc
Kulakovskiy et al.(2013)
RUNX1_HUMAN.H11MO.0.A 		0.957 0.957
Runx1
M09372_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX1_MOUSE.H11MO.0.A 		0.957 0.957
RUNX1
M09632_2.00 		Homo sapiens
HAACCACADV
BHTGTGGTTD		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE29180 		0.957 0.957
RUNX1
M09631_2.00 		Homo sapiens
VCCACWTCCTBY
RVAGGAWGTGGB		 Misc
Heinz et al.(2010)
Jurkat-RUNX1_GSE17954 		0.957 0.957
Runx1
M09633_2.00 		Mus musculus
NWAACCACAR
YTGTGGTTWN		 Misc
Heinz et al.(2010)
HPC7-Runx1_GSE22178 		0.957 0.957
RUNX1
M11258_2.00 		Homo sapiens
ACCRCA
TGYGGT		 Transfac
Matys et al.(2006)
V$AML1_01 		0.957 0.957
RUNX1
M11259_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_01 		0.957 0.957
RUNX1
M11260_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4_02 		0.957 0.957
RUNX1
M11261_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q4 		0.957 0.957
RUNX1
M11262_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q5 		0.957 0.957
RUNX1
M11263_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML1_Q6 		0.957 0.957
RUNX3
M03464_2.00 		Homo sapiens
HRACCGCAAACCRCAN
NTGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_1 		0.883 0.883
RUNX3
M03465_2.00 		Homo sapiens
WAACCRCARN
NYTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX3_2 		0.883 0.883
RUNX3
M03466_2.00 		Homo sapiens
HDACCRCADWAACCRCRN
NYGYGGTTWHTGYGGTHD		 SELEX
Jolma et al.(2013)
RUNX3_3 		0.883 0.883
RUNX3
M03467_2.00 		Homo sapiens
HRACCRCAAH
DTTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX3_4 		0.883 0.883
RUNX3
M02751_2.00 		Homo sapiens
WACCRCAM
KTGYGGTW		 SELEX
Jolma et al.(2010)
RUNX3_monomer 		0.883 0.883
RUNX3
M05731_2.00 		Homo sapiens
YWAACCGCAAAAACCGCARV
BYTGCGGTTTTTGCGGTTWR		 SELEX
Yin et al.(2017)
RUNX3_FL_HT-SELEX 		0.883 0.883
RUNX3
M09369_2.00 		Homo sapiens
HAACCACARN
NYTGTGGTTD		 Misc
Kulakovskiy et al.(2013)
RUNX3_HUMAN.H11MO.0.A 		0.883 0.883
Runx3
M09374_2.00 		Mus musculus
NHRACCACARVN
NBYTGTGGTYDN		 Misc
Kulakovskiy et al.(2013)
RUNX3_MOUSE.H11MO.0.A 		0.883 0.883
RUNX3
M11252_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3_01 		0.883 0.883
RUNX3
M11253_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q3 		0.883 0.883
RUNX3
M11254_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML2_Q4 		0.883 0.883
RUNX3
M05732_2.00 		Homo sapiens
HWAACCACRAAAACCACRARN
NYTYGTGGTTTTYGTGGTTWD		 SELEX
Yin et al.(2017)
RUNX3_FL_Methyl-HT-SELEX 		0.883 0.883
Runx2
M01307_2.00 		Mus musculus
NHDACCRCAN
NTGYGGTHDN		 PBM
Lambert et al.(2019)
pTH9764 		0.862 0.862
RUNX2
M03468_2.00 		Homo sapiens
HRACCGCAAACCRCRD
HYGYGGTTTGCGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_1 		0.862 0.862
RUNX2
M03469_2.00 		Homo sapiens
HRACCRCADWWACCRCAD
HTGYGGTWWHTGYGGTYD		 SELEX
Jolma et al.(2013)
RUNX2_2 		0.862 0.862
RUNX2
M03470_2.00 		Homo sapiens
WAACCRCAR
YTGYGGTTW		 SELEX
Jolma et al.(2013)
RUNX2_3 		0.862 0.862
RUNX2
M05733_2.00 		Homo sapiens
NHRACCRCADWAACCRCAVN
NBTGYGGTTWHTGYGGTYDN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_HT-SELEX 		0.862 0.862
RUNX2
M09370_2.00 		Homo sapiens
MMHAACCACAVVMH
DKBBTGTGGTTDKK		 Misc
Kulakovskiy et al.(2013)
RUNX2_HUMAN.H11MO.0.A 		0.862 0.862
Runx2
M09373_2.00 		Mus musculus
VWRACCACARVV
BBYTGTGGTYWB		 Misc
Kulakovskiy et al.(2013)
RUNX2_MOUSE.H11MO.0.A 		0.862 0.862
RUNX2
M09630_2.00 		Homo sapiens
NHVACCACANNN
NNNTGTGGTBDN		 Misc
Heinz et al.(2010)
PCa-RUNX2_GSE33889 		0.862 0.862
RUNX2
M11255_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q3 		0.862 0.862
RUNX2
M11256_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$AML3_Q6 		0.862 0.862
RUNX2
M11257_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$OSF2_Q6 		0.862 0.862
RUNX2
M05734_2.00 		Homo sapiens
NWAACCACRAAAACCACRRN
NYYGTGGTTTTYGTGGTTWN		 SELEX
Yin et al.(2017)
RUNX2_eDBD_Methyl-HT-SELEX 		0.862 0.862
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000112019 Runt 56 149

Links

Other Runt family TFs
Other Danio rerio TFs

185 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI001442 Acyrthosiphon pisum ACYPI001442 I 0.723
ACYPI007541 Acyrthosiphon pisum ACYPI007541 I 0.734
AAEL006160 Aedes aegypti AAEL006160 I 0.755
AAEL007036 Aedes aegypti AAEL007036 I 0.745
ENSAMEG00000005325 Ailuropoda melanoleuca ENSAMEG00000005325 I 0.957
RUNX2 Anolis carolinensis ENSACAG00000013003 I 0.862
AALB007753 Anopheles albimanus AALB007753 I 0.766
AALB009220 Anopheles albimanus AALB009220 I 0.723
AARA011332 Anopheles arabiensis AARA011332 I 0.732
AARA011472 Anopheles arabiensis AARA011472 I 0.723
AATE002063 Anopheles atroparvus AATE002063 I 0.755
AATE018583 Anopheles atroparvus AATE018583 N 0.702
ACHR007816 Anopheles christyi ACHR007816 I 0.755
ACOM031089 Anopheles coluzzii ACOM031089 I 0.723
ACUA000036 Anopheles culicifacies ACUA000036 I 0.702
ACUA002933 Anopheles culicifacies ACUA002933 I 0.766
ACUA016618 Anopheles culicifacies ACUA016618 I 0.734
ADIR001029 Anopheles dirus ADIR001029 I 0.745
ADIR005600 Anopheles dirus ADIR005600 I 0.734
AEPI010884 Anopheles epiroticus AEPI010884 I 0.734
AEPI011470 Anopheles epiroticus AEPI011470 I 0.745
AFAF000166 Anopheles farauti AFAF000166 I 0.734
AFAF002111 Anopheles farauti AFAF002111 I 0.735
AFUN005474 Anopheles funestus AFUN005474 I 0.702
AFUN010423 Anopheles funestus AFUN010423 I 0.734
AFUN010424 Anopheles funestus AFUN010424 I 0.766
AGAP001094 Anopheles gambiae AGAP001094 I 0.723
AMAM016300 Anopheles maculatus AMAM016300 I 0.734
AMEC007551 Anopheles melas AMEC007551 I 0.723
AMEC011614 Anopheles melas AMEC011614 I 0.766
AMEM004753 Anopheles merus AMEM004753 I 0.723
AMIN005759 Anopheles minimus AMIN005759 I 0.734
AQUA008686 Anopheles quadriannulatus AQUA008686 I 0.737
AQUA009447 Anopheles quadriannulatus AQUA009447 N 0.713
AQUA009970 Anopheles quadriannulatus AQUA009970 I 0.723
ASIS002518 Anopheles sinensis ASIS002518 I 0.766
ASTEI07770 Anopheles stephensi ASTEI07770 I 0.734
ASTEI07771 Anopheles stephensi ASTEI07771 I 0.755
ENSAMXG00000000881 Astyanax mexicanus ENSAMXG00000000881 I 0.872
ENSAMXG00000004048 Astyanax mexicanus ENSAMXG00000004048 I 0.883
ENSAMXG00000012244 Astyanax mexicanus ENSAMXG00000012244 I 0.989
ENSAMXG00000017349 Astyanax mexicanus ENSAMXG00000017349 I 0.840
ACEP16391 Atta cephalotes ACEP16391 I 0.723
ACEP16397 Atta cephalotes ACEP16397 I 0.745
ACEP16409 Atta cephalotes ACEP16409 I 0.755
BGIBMGA008970 Bombyx mori BGIBMGA008970 I 0.703
ENSP00000409227-D1 Bos grunniens ENSP00000409227-D1 I 0.947
RUNX2 Bos taurus ENSBTAG00000004104 I 0.862
RUNX1 Bos taurus ENSBTAG00000004742 I 0.947
RUNX1 Callithrix jacchus ENSCJAG00000002816 I 0.957
RUNX3 Callithrix jacchus ENSCJAG00000020815 I 0.883
Cflo_03909--XP_394016.2_APIME Camponotus floridanus Cflo_03909--XP_394016.2_APIME I 0.766
Cflo_03911--XP_394014.2_APIME Camponotus floridanus Cflo_03911--XP_394014.2_APIME I 0.745
RUNX1 Canis familiaris ENSCAFG00000009596 I 0.957
ENSCPOG00000002684 Cavia porcellus ENSCPOG00000002684 I 0.947
RUNX2 Cavia porcellus ENSCPOG00000005277 I 0.862
Cmyd_10020455 Chelonia mydas Cmyd_10020455 I 0.862
Cmyd_10021516 Chelonia mydas Cmyd_10021516 I 0.957
ENSCSAG00000008703 Chlorocebus sabaeus ENSCSAG00000008703 I 0.957
ENSCSAG00000012528 Chlorocebus sabaeus ENSCSAG00000012528 I 0.862
CLEC011123 Cimex lectularius CLEC011123 I 0.713
CLEC011127 Cimex lectularius CLEC011127 I 0.745
CpipJ_CPIJ006369 Culex pipiens CpipJ_CPIJ006369 I 0.723
CpipJ_CPIJ016826 Culex pipiens CpipJ_CPIJ016826 I 0.747
CPIJ006369 Culex quinquefasciatus CPIJ006369 I 0.723
CPIJ016826 Culex quinquefasciatus CPIJ016826 I 0.747
KGM_02818 Danaus plexippus KGM_02818 I 0.755
runx2a Danio rerio ENSDARG00000040261 I 0.872
runx3 Danio rerio ENSDARG00000052826 I 0.883
runx2b Danio rerio ENSDARG00000059233 I 0.840
DAPPUDRAFT_290557 Daphnia pulex DAPPUDRAFT_290557 I 0.713
RUNX1 Dasypus novemcinctus ENSDNOG00000015041 I 0.957
RUNX2 Dasypus novemcinctus ENSDNOG00000034361 I 0.862
YQE_12218 Dendroctonus ponderosae YQE_12218 I 0.745
Runx1 Dipodomys ordii ENSDORG00000004347 I 0.957
GK25373 Drosophila willistoni FBgn0227332 I 0.702
RUNX1 Equus caballus ENSECAG00000003462 I 0.957
RUNX2 Equus caballus ENSECAG00000020875 I 0.798
RUNX2 Erinaceus europaeus ENSEEUG00000009243 I 0.862
ENSFALG00000000025 Ficedula albicollis ENSFALG00000000025 I 0.957
RUNX1 Gallus gallus ENSGALG00000016022 I 0.957
runx3 Gasterosteus aculeatus ENSGACG00000007301 I 0.883
runx2b Gasterosteus aculeatus ENSGACG00000012322 I 0.851
RUNX1 Gasterosteus aculeatus ENSGACG00000015276 I 0.936
Gfo_R015914 Geospiza fortis Gfo_R015914 I 0.936
RUNX1 Gorilla gorilla ENSGGOG00000012862 I 0.957
RUNX2 Gorilla gorilla ENSGGOG00000012890 I 0.862
Hsal_04635--XP_394013.3_APIME Harpegnathos saltator Hsal_04635--XP_394013.3_APIME I 0.723
Hsal_12319--XP_394016.2_APIME Harpegnathos saltator Hsal_12319--XP_394016.2_APIME I 0.766
HMEL009843 Heliconius melpomene HMEL009843 I 0.758
RUNX2 Homo sapiens ENSG00000124813 D 0.862
RUNX1 Homo sapiens ENSG00000159216 D 0.961
ENSSTOG00000010163 Ictidomys tridecemlineatus ENSSTOG00000010163 I 0.862
ISCW023333 Ixodes scapularis ISCW023333 I 0.713
ENSLACG00000011545 Latimeria chalumnae ENSLACG00000011545 I 0.862
ENSLACG00000013776 Latimeria chalumnae ENSLACG00000013776 I 0.883
ENSLACG00000015930 Latimeria chalumnae ENSLACG00000015930 I 0.957
ENSLOCG00000002744 Lepisosteus oculatus ENSLOCG00000002744 I 0.883
ENSLOCG00000010990 Lepisosteus oculatus ENSLOCG00000010990 I 0.700
ENSLOCG00000015816 Lepisosteus oculatus ENSLOCG00000015816 I 0.862
LDEC003023 Leptinotarsa decemlineata LDEC003023 I 0.723
LDEC006650 Leptinotarsa decemlineata LDEC006650 I 0.730
LDEC020505 Leptinotarsa decemlineata LDEC020505 I 0.723
RUNX1 Loxodonta africana ENSLAFG00000004290 I 0.957
LCUP002657 Lucilia cuprina LCUP002657 I 0.745
LLOJ002049 Lutzomyia longipalpis LLOJ002049 I 0.717
ENSP00000300305 Macaca fascicularis ENSP00000300305 I 0.926
RUNX1 Macaca mulatta ENSMMUG00000001649 I 0.957
RUNX2 Macaca mulatta ENSMMUG00000019819 I 0.862
MESCA007079 Megaselia scalaris MESCA007079 I 0.800
MCINX000302 Melitaea cinxia MCINX000302 I 0.745
RUNX1 Microcebus murinus ENSMICG00000011998 I 0.957
RUNX2 Monodelphis domestica ENSMODG00000018912 I 0.862
RUNX1 Monodelphis domestica ENSMODG00000021051 I 0.947
ENSMPUG00000001340 Mustela putorius furo ENSMPUG00000001340 I 0.957
ENSMPUG00000015804 Mustela putorius furo ENSMPUG00000015804 I 0.777
Runx1 Mus musculus ENSMUSG00000022952 D 0.957
Runx2 Mus musculus ENSMUSG00000039153 D 0.862
RUNX3 Myotis lucifugus ENSMLUG00000003395 I 0.798
NV10998 Nasonia vitripennis NV10998 I 0.734
NV11000 Nasonia vitripennis NV11000 I 0.723
ENSNLEG00000004310 Nomascus leucogenys ENSNLEG00000004310 I 0.957
ENSOPRG00000000765 Ochotona princeps ENSOPRG00000000765 I 0.947
RUNX2 Ochotona princeps ENSOPRG00000002943 I 0.862
Ocbimv22002042m.g Octopus bimaculoides Ocbimv22002042m.g I 0.723
Ogr17914 Ophisaurus gracilis Ogr17914 I 0.957
ENSONIG00000004914 Oreochromis niloticus ENSONIG00000004914 I 0.957
ENSONIG00000008210 Oreochromis niloticus ENSONIG00000008210 I 0.883
RUNX1 Oryctolagus cuniculus ENSOCUG00000013731 I 0.957
runx3 Oryzias latipes ENSORLG00000017515 I 0.883
RUNX2 Otolemur garnettii ENSOGAG00000003900 I 0.862
RUNX1 Otolemur garnettii ENSOGAG00000033362 I 0.957
RUNX1 Pan troglodytes ENSPTRG00000013883 I 0.957
RUNX2 Pan troglodytes ENSPTRG00000018228 I 0.862
ENSPANG00000006186 Papio anubis ENSPANG00000006186 I 0.862
ENSPANG00000007357 Papio anubis ENSPANG00000007357 I 0.957
PHUM333300 Pediculus humanus PHUM333300 I 0.777
PHUM333340 Pediculus humanus PHUM333340 I 0.713
ENSPSIG00000017547 Pelodiscus sinensis ENSPSIG00000017547 I 0.957
PPAI010985 Phlebotomus papatasi PPAI010985 I 0.755
PPAI010986 Phlebotomus papatasi PPAI010986 I 0.713
ENSPFOG00000003997 Poecilia formosa ENSPFOG00000003997 I 0.883
Pvit_01165 Pogona vitticeps Pvit_01165 I 0.862
Pvit_04762 Pogona vitticeps Pvit_04762 I 0.957
ENSPPYG00000001714 Pongo abelii ENSPPYG00000001714 I 0.883
ENSPPYG00000011394 Pongo abelii ENSPPYG00000011394 I 0.957
ENSPPYG00000016664 Pongo abelii ENSPPYG00000016664 I 0.862
RUNX1 Pteropus vampyrus ENSPVAG00000001606 I 0.947
RUNX2 Pteropus vampyrus ENSPVAG00000001720 I 0.851
RUNX3 Pteropus vampyrus ENSPVAG00000005839 N 0.755
Runx1 Rattus norvegicus ENSRNOG00000001704 I 0.957
Runx2 Rattus norvegicus ENSRNOG00000020193 I 0.862
RPRC000026 Rhodnius prolixus RPRC000026 I 0.734
RPRC005391 Rhodnius prolixus RPRC005391 I 0.745
Sakowv30005496m.g Saccoglossus kowalevskii Sakowv30005496m.g I 0.787
ENSSHAG00000009950 Sarcophilus harrisii ENSSHAG00000009950 I 0.862
ENSSHAG00000014782 Sarcophilus harrisii ENSSHAG00000014782 I 0.947
SINV13317 Solenopsis invicta SINV13317 I 0.766
SINV13345 Solenopsis invicta SINV13345 I 0.728
SMAR009403 Strigamia maritima SMAR009403 I 0.766
ENSSSCG00000012051 Sus scrofa ENSSSCG00000012051 I 0.957
ENSSSCG00000025261 Sus scrofa ENSSSCG00000025261 I 0.857
RUNX2 Taeniopygia guttata ENSTGUG00000013249 I 0.862
runx3 Takifugu rubripes ENSTRUG00000001517 I 0.894
runx2 Takifugu rubripes ENSTRUG00000003501 I 0.862
runx1 Takifugu rubripes ENSTRUG00000012611 I 0.957
ENSTRUG00000017865 Takifugu rubripes ENSTRUG00000017865 I 0.798
ENSTSYG00000005097 Tarsius syrichta ENSTSYG00000005097 I 0.957
tetur01g02340 Tetranychus urticae tetur01g02340 I 0.702
ENSTNIG00000009855 Tetraodon nigroviridis ENSTNIG00000009855 I 0.702
runx3 Tetraodon nigroviridis ENSTNIG00000016911 I 0.894
ENSTNIG00000018690 Tetraodon nigroviridis ENSTNIG00000018690 I 0.947
TC005566 Tribolium castaneum TC005566 I 0.755
TC006536 Tribolium castaneum TC006536 I 0.745
TC006542 Tribolium castaneum TC006542 I 0.713
RUNX2 Tursiops truncatus ENSTTRG00000006943 I 0.862
RUNX1 Tursiops truncatus ENSTTRG00000014160 I 0.957
runx2.L Xenopus laevis XB-GENE-864817 I 0.830
runx1.L Xenopus laevis XB-GENE-864949 I 0.947
runx2 Xenopus tropicalis XB-GENE-482021 I 0.819
runx3 Xenopus tropicalis XB-GENE-487784 I 0.872
XP_002939386 Xenopus tropicalis XP_002939386 I 0.968
XP_002939387 Xenopus tropicalis XP_002939387 I 0.968
XP_002939388 Xenopus tropicalis XP_002939388 I 0.700
ENSXMAG00000018835 Xiphophorus maculatus ENSXMAG00000018835 I 0.883