Al_scaffold_0003_3669 (Arabidopsis lyrata)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 Al_scaffold_0003_3669 T319880_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.918 0.918
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.857 0.857
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Al_scaffold_0003_3669 RWP-RK 614 662

Links

Other RWP-RK family TFs
Other Arabidopsis lyrata TFs

414 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI007541 Acyrthosiphon pisum ACYPI007541 I 0.000
AAEL006160 Aedes aegypti AAEL006160 I 0.000
ENSAMEG00000009223 Ailuropoda melanoleuca ENSAMEG00000009223 I 0.000
ENSAPLG00000007026 Anas platyrhynchos ENSAPLG00000007026 I 0.000
AALB007752 Anopheles albimanus AALB007752 I 0.000
AATE002063 Anopheles atroparvus AATE002063 I 0.000
ACUA008762 Anopheles culicifacies ACUA008762 I 0.000
ADAC004330 Anopheles darlingi ADAC004330 I 0.000
AMAM011616 Anopheles maculatus AMAM011616 I 0.000
AQUA009446 Anopheles quadriannulatus AQUA009446 I 0.000
ASTEI07771 Anopheles stephensi ASTEI07771 I 0.000
Afo_R004888 Aptenodytes forsteri Afo_R004888 I 0.000
ACEP16400 Atta cephalotes ACEP16400 I 0.000
ENSBTAP00000006227-D1 Bos grunniens ENSBTAP00000006227-D1 I 0.000
Brh_R001637 Buceros rhinoceros Brh_R001637 I 0.000
RUNX1 Callithrix jacchus ENSCJAG00000002816 I 0.000
Aan_R007315 Calypte anna Aan_R007315 I 0.000
ENSCING00000002253 Ciona intestinalis ENSCING00000002253 I 0.000
CpipJ_CPIJ016825 Culex pipiens CpipJ_CPIJ016825 I 0.000
CPIJ016825 Culex quinquefasciatus CPIJ016825 I 0.000
KGM_21075 Danaus plexippus KGM_21075 I 0.000
KGM_21065 Danaus plexippus KGM_21065 I 0.000
CABZ01102124.1 Danio rerio ENSDARG00000103592 I 0.000
DAPPUDRAFT_290555 Daphnia pulex DAPPUDRAFT_290555 I 0.000
DAPPUDRAFT_290557 Daphnia pulex DAPPUDRAFT_290557 I 0.000
RUNX2 Felis catus ENSFCAG00000022480 I 0.000
ENSFCAG00000029032 Felis catus ENSFCAG00000029032 I 0.000
Gfo_R013848 Geospiza fortis Gfo_R013848 I 0.000
HMEL009842 Heliconius melpomene HMEL009842 I 0.000
HMEL014739 Heliconius melpomene HMEL014739 I 0.000
RUNX2 Loxodonta africana ENSLAFG00000005054 I 0.000
LCUP002656 Lucilia cuprina LCUP002656 I 0.000
RUNX1 Macaca mulatta ENSMMUG00000001649 I 0.000
MESCA007079 Megaselia scalaris MESCA007079 I 0.000
MESCA007078 Megaselia scalaris MESCA007078 I 0.000
MCINX000297 Melitaea cinxia MCINX000297 N 0.000
RUNX2 Myotis lucifugus ENSMLUG00000000514 I 0.000
ENSOANG00000031074 Ornithorhynchus anatinus ENSOANG00000031074 I 0.000
RUNX2 Ornithorhynchus anatinus ENSOANG00000008265 I 0.000
ENSOCUG00000011739 Oryctolagus cuniculus ENSOCUG00000011739 I 0.000
ENSSSCG00000025551 Sus scrofa ENSSSCG00000025551 I 0.000
RUNX2 Tupaia belangeri ENSTBEG00000000948 I 0.000