Bra000307 (Brassica rapa)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 Bra000307 T319943_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
NLP7
M07251_2.00 		Arabidopsis thaliana
WNDTGNCYYTTSRDD
HHYSAARRGNCAHNW		 Dap-seq
OMalley et al.(2016)
NLP7_col_a 		0.837 0.837
NLP4
M07248_2.00 		Arabidopsis thaliana
NNHNNBTGCTGYHNN
NNDRCAGCAVNNDNN		 Dap-seq
OMalley et al.(2016)
AtNLP4_col_b 		0.776 0.776
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra000307.1-P RWP-RK 577 625

Links

Other RWP-RK family TFs
Other Brassica rapa TFs

415 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ANCCAN_08211 Ancylostoma caninum ANCCAN_08211 I 0.000
ACAC_0000449001 Angiostrongylus cantonensis ACAC_0000449001 I 0.000
ACOC_0001074701 Angiostrongylus costaricensis ACOC_0001074701 I 0.000
ALUE_0000980501 Ascaris lumbricoides ALUE_0000980501 I 0.000
ASU_07400 Ascaris suum ASU_07400 I 0.000
Bm3734 Brugia malayi Bm3734 I 0.000
BXY_0327500 Bursaphelenchus xylophilus BXY_0327500 I 0.000
CBG00123 Caenorhabditis briggsae CBG00123 I 0.000
odr-7 Caenorhabditis elegans WBGene00003854 D 0.000
CRE14738 Caenorhabditis remanei CRE14738 I 0.000
CGOC_0000264301 Cylicostephanus goldi CGOC_0000264301 I 0.000
DICVIV_10361 Dictyocaulus viviparus DICVIV_10361 I 0.000
nDi.2.2.2.g08322 Dirofilaria immitis nDi.2.2.2.g08322 I 0.000
HPLM_0000729201 Haemonchus placei HPLM_0000729201 I 0.000
HPBE_0000822201 Heligmosomoides bakeri HPBE_0000822201 I 0.000
Hba_12147 Heterorhabditis bacteriophora Hba_12147 I 0.000
LOAG_12992 Loa loa LOAG_12992 I 0.000
nOo.2.0.1.g08993 Onchocerca ochengi nOo.2.0.1.g08993 I 0.000
WBGene00238790 Onchocerca volvulus WBGene00238790 I 0.000
scaffold532-EXSNAP2012.4 Pristionchus exspectatus scaffold532-EXSNAP2012.4 I 0.000
L596_g18571 Steinernema carpocapsae L596_g18571 I 0.000
L893_g9511 Steinernema glaseri L893_g9511 I 0.000
L898_g1167 Steinernema monticolum L898_g1167 I 0.000
L892_g8133 Steinernema scapterisci L892_g8133 I 0.000
SPAL_0001051900 Strongyloides papillosus SPAL_0001051900 I 0.000
SSTP_0000225800 Strongyloides stercoralis SSTP_0000225800 I 0.000
SVE_1772700 Strongyloides venezuelensis SVE_1772700 I 0.000
SMUV_0000837101 Syphacia muris SMUV_0000837101 I 0.000
TCLT_0001044101 Thelazia callipaeda TCLT_0001044101 I 0.000