Bra016542 (Brassica rapa)
RWP-RK

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02042 (RWP-RK) IPR003035 Bra016542 T319960_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RKD2
M07249_2.00 		Arabidopsis thaliana
NHGWCBNTTCRDCTTCYHN
NDRGAAGHYGAANVGWCDN		 Dap-seq
OMalley et al.(2016)
RKD2_col_a 		0.714 0.714
RKD2
M07250_2.00 		Arabidopsis thaliana
GWCBBTTCRDMTTCC
GGAAKHYGAAVVGWC		 Dap-seq
OMalley et al.(2016)
RKD2_colamp_a 		0.714 0.714
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bra016542.1-P RWP-RK 128 176

Links

Other RWP-RK family TFs
Other Brassica rapa TFs

32 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_006_00040 Aquilegia coerulea Aquca_006_00040 I 0.000
Aquca_006_00360 Aquilegia coerulea Aquca_006_00360 I 0.000
PK01815.1 Cannabis sativa PK01815.1 N 0.000
PK07533.1 Cannabis sativa PK07533.1 I 0.000
evm.TU.supercontig_538.1 Carica papaya evm.TU.supercontig_538.1 I 0.000
evm.TU.supercontig_129.74 Carica papaya evm.TU.supercontig_129.74 I 0.000
Ca_15971 Cicer arietinum Ca_15971 N 0.000
Ca_09362 Cicer arietinum Ca_09362 I 0.000
Cla016748 Citrullus lanatus Cla016748 I 0.000
Cla005975 Citrullus lanatus Cla005975 I 0.000
Cla016841 Citrullus lanatus Cla016841 I 0.000
Cla020641 Citrullus lanatus Cla020641 I 0.000
Ciclev10032777m.g Citrus clementina Ciclev10032777m.g I 0.000
Ciclev10013334m.g Citrus clementina Ciclev10013334m.g I 0.000
Ciclev10027584m.g Citrus clementina Ciclev10027584m.g I 0.000
Ciclev10029834m.g Citrus clementina Ciclev10029834m.g I 0.000
orange1.1g044691m.g Citrus sinensis orange1.1g044691m.g I 0.000
orange1.1g043159m.g Citrus sinensis orange1.1g043159m.g I 0.000
orange1.1g042014m.g Citrus sinensis orange1.1g042014m.g I 0.000
orange1.1g029952m.g Citrus sinensis orange1.1g029952m.g I 0.000
Cucsa.174700 Cucumis sativus Cucsa.174700 I 0.000
Cucsa.284240 Cucumis sativus Cucsa.284240 I 0.000
Cucsa.238410 Cucumis sativus Cucsa.238410 I 0.000
Eucgr.H02330 Eucalyptus grandis Eucgr.H02330 I 0.000
gene21832-v1.0-hybrid Fragaria vesca gene21832-v1.0-hybrid I 0.000
gene04504-v1.0-hybrid Fragaria vesca gene04504-v1.0-hybrid I 0.000
GLYMA01G40370 Glycine max GLYMA01G40370 I 0.000
GLYMA02G13960 Glycine max GLYMA02G13960 I 0.000
GLYMA04G01210 Glycine max GLYMA04G01210 I 0.000
GLYMA06G01240 Glycine max GLYMA06G01240 I 0.000
GLYMA11G12240 Glycine max GLYMA11G12240 I 0.000
GLYMA12G04440 Glycine max GLYMA12G04440 I 0.000
GLYMA17G17100 Glycine max GLYMA17G17100 I 0.000
GLYMA19G05050 Glycine max GLYMA19G05050 I 0.000
GLYMA01G09510 Glycine max GLYMA01G09510 I 0.000
Gorai.003G032100 Gossypium raimondii Gorai.003G032100 I 0.000
Gorai.008G085200 Gossypium raimondii Gorai.008G085200 I 0.000
Gorai.007G056900 Gossypium raimondii Gorai.007G056900 I 0.000
Gorai.001G251000 Gossypium raimondii Gorai.001G251000 I 0.000
Lus10029101.g Linum usitatissimum Lus10029101.g I 0.000
Lus10019273.g Linum usitatissimum Lus10019273.g N 0.000
Lus10013059.g Linum usitatissimum Lus10013059.g I 0.000
Lus10011722.g Linum usitatissimum Lus10011722.g I 0.000
chr2.CM0021.50.nd Lotus japonicus chr2.CM0021.50.nd I 0.000
chr2.CM0124.640.nd Lotus japonicus chr2.CM0124.640.nd I 0.000
MDP0000183562 Malus domestica MDP0000183562 I 0.000
MDP0000239026 Malus domestica MDP0000239026 I 0.000
MDP0000261154 Malus domestica MDP0000261154 N 0.000
MDP0000738631 Malus domestica MDP0000738631 I 0.000
MDP0000863909 Malus domestica MDP0000863909 I 0.000
MDP0000891108 Malus domestica MDP0000891108 I 0.000
MDP0000891899 Malus domestica MDP0000891899 I 0.000
cassava35454.valid.m1 Manihot esculenta cassava35454.valid.m1 I 0.000
cassava32522.m1 Manihot esculenta cassava32522.m1 I 0.000
cassava24775.valid.m1 Manihot esculenta cassava24775.valid.m1 I 0.000
cassava9577.m1 Manihot esculenta cassava9577.m1 I 0.000
cassava46237.m1 Manihot esculenta cassava46237.m1 I 0.000
cassava41140.m1 Manihot esculenta cassava41140.m1 I 0.000
cassava40461.m1 Manihot esculenta cassava40461.m1 I 0.000
MTR_4g097440 Medicago truncatula MTR_4g097440 I 0.000
MTR_5g015090 Medicago truncatula MTR_5g015090 I 0.000
MTR_7g029400 Medicago truncatula MTR_7g029400 I 0.000
MTR_8g015250 Medicago truncatula MTR_8g015250 I 0.000
mgf003466m Mimulus guttatus mgf003466m I 0.000
mgf017392m Mimulus guttatus mgf017392m I 0.000
mgf021986m Mimulus guttatus mgf021986m I 0.000
GSMUA_Achr4G03790_001 Musa acuminata GSMUA_Achr4G03790_001 I 0.000
GSMUA_Achr1G12710_001 Musa acuminata GSMUA_Achr1G12710_001 I 0.000
POPTR_0017s14490 Populus trichocarpa POPTR_0017s14490 I 0.000
POPTR_0014s00790 Populus trichocarpa POPTR_0014s00790 N 0.000
POPTR_0010s14530 Populus trichocarpa POPTR_0010s14530 I 0.000
POPTR_0009s12250 Populus trichocarpa POPTR_0009s12250 I 0.000
POPTR_0008s11260 Populus trichocarpa POPTR_0008s11260 I 0.000
POPTR_0007s14740 Populus trichocarpa POPTR_0007s14740 I 0.000
POPTR_0004s16560 Populus trichocarpa POPTR_0004s16560 I 0.000
Pm015434 Prunus mume Pm015434 I 0.000
Pm002353 Prunus mume Pm002353 I 0.000
PRUPE_ppa011589mg Prunus persica PRUPE_ppa011589mg I 0.000
PRUPE_ppa011644mg Prunus persica PRUPE_ppa011644mg I 0.000
PRUPE_ppa011366mg Prunus persica PRUPE_ppa011366mg I 0.000
30138.m003866 Ricinus communis 30138.m003866 I 0.000
30131.m007078 Ricinus communis 30131.m007078 I 0.000
SapurV1A.0060s0610 Salix purpurea SapurV1A.0060s0610 I 0.000
SapurV1A.0084s0340 Salix purpurea SapurV1A.0084s0340 I 0.000
SapurV1A.0235s0220 Salix purpurea SapurV1A.0235s0220 N 0.000
SapurV1A.0432s0050 Salix purpurea SapurV1A.0432s0050 I 0.000
SapurV1A.0608s0130 Salix purpurea SapurV1A.0608s0130 N 0.000
Solyc04g005170.1 Solanum lycopersicum Solyc04g005170.1 I 0.000
Solyc01g109880.2 Solanum lycopersicum Solyc01g109880.2 I 0.000
PGSC0003DMG400030946 Solanum tuberosum PGSC0003DMG400030946 I 0.000
PGSC0003DMG400001916 Solanum tuberosum PGSC0003DMG400001916 I 0.000
TCM_000835 Theobroma cacao TCM_000835 I 0.000
VIT_01s0010g00930 Vitis vinifera VIT_01s0010g00930 I 0.000
VIT_03s0038g04450 Vitis vinifera VIT_03s0038g04450 I 0.000
VIT_18s0001g13040 Vitis vinifera VIT_18s0001g13040 N 0.000
VIT_00s0541g00020 Vitis vinifera VIT_00s0541g00020 N 0.000