Bo5g051980 (Brassica oleracea)
SBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03110 (SBP) IPR004333 Bo5g051980 T322441_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPL10
M01084_2.00 		Arabidopsis thaliana
NNGTACGRHN
NDYCGTACNN		 PBM
Sullivan et al.(2014)
pTH9749 		0.979 0.920
SPL11
M02471_2.00 		Arabidopsis thaliana
NNNHGTACGGWN
NWCCGTACDNNN		 PBM
Weirauch et al.(2014)
pTH9392 		0.973 0.907
SPL11
M07254_2.00 		Arabidopsis thaliana
HTGTACTDDHH
DDHHAGTACAD		 Dap-seq
OMalley et al.(2016)
SPL11_col100_a 		0.973 0.907
For this family, TFs with SR scores > 0.885 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Bo5g051980.1 SBP 153 227

Links

Other SBP family TFs
Other Brassica oleracea TFs

48 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SPL2 Arabidopsis lyrata scaffold_800740.1 N 0.893
SPL11 Arabidopsis lyrata scaffold_103051.1 I 0.969
SPL10 Arabidopsis lyrata fgenesh2_kg.1__2893__AT1G27370.2 I 0.979
SPL10 Arabidopsis thaliana AT1G27370 D 0.979
SPL2 Arabidopsis thaliana AT5G43270 N 0.893
SPL11 Arabidopsis thaliana AT1G27360 D 0.973
Bostr.15697s0062 Boechera stricta Bostr.15697s0062 I 0.983
Bostr.15697s0063 Boechera stricta Bostr.15697s0063 I 0.981
Bo9g058970 Brassica oleracea Bo9g058970 N 0.893
Bo7g065290 Brassica oleracea Bo7g065290 N 0.888
Bo7g049950 Brassica oleracea Bo7g049950 I 0.989
Bo7g049940 Brassica oleracea Bo7g049940 I 0.985
Bo5g051970 Brassica oleracea Bo5g051970 I 0.984
Bo3g141480 Brassica oleracea Bo3g141480 I 0.980
Bra010949 Brassica rapa Bra010949 I 0.989
Bra027478 Brassica rapa Bra027478 N 0.893
Bra030040 Brassica rapa Bra030040 I 0.991
Bra030041 Brassica rapa Bra030041 I 0.985
Bra032822 Brassica rapa Bra032822 I 0.949
Bra032823 Brassica rapa Bra032823 I 0.984
Bra033671 Brassica rapa Bra033671 N 0.893
PK16953.1 Cannabis sativa PK16953.1 N 0.895
Cagra.8874s0008 Capsella grandiflora Cagra.8874s0008 I 0.983
Cagra.8874s0007 Capsella grandiflora Cagra.8874s0007 I 0.978
Cagra.8694s0002 Capsella grandiflora Cagra.8694s0002 N 0.889
Carubv10026434m.g Capsella rubella Carubv10026434m.g N 0.889
Carubv10009367m.g Capsella rubella Carubv10009367m.g I 0.978
Carubv10009364m.g Capsella rubella Carubv10009364m.g I 0.983
evm.TU.supercontig_43.66 Carica papaya evm.TU.supercontig_43.66 I 0.897
Ca_08506 Cicer arietinum Ca_08506 I 0.942
Ciclev10031391m.g Citrus clementina Ciclev10031391m.g N 0.886
orange1.1g011640m.g Citrus sinensis orange1.1g011640m.g N 0.886
Eucgr.B03500 Eucalyptus grandis Eucgr.B03500 I 0.937
Thhalv10003215m.g Eutrema salsugineum Thhalv10003215m.g N 0.893
Thhalv10007832m.g Eutrema salsugineum Thhalv10007832m.g I 0.979
Thhalv10007882m.g Eutrema salsugineum Thhalv10007882m.g I 0.970
Lus10006411.g Linum usitatissimum Lus10006411.g I 0.938
Lus10011356.g Linum usitatissimum Lus10011356.g I 0.933
MDP0000155354 Malus domestica MDP0000155354 N 0.891
mgf019346m Mimulus guttatus mgf019346m I 0.929
mgf010397m Mimulus guttatus mgf010397m N 0.887
POPTR_0001s13890 Populus trichocarpa POPTR_0001s13890 I 0.903
POPTR_0003s17120 Populus trichocarpa POPTR_0003s17120 I 0.903
Pm007020 Prunus mume Pm007020 N 0.890
29929.m004641 Ricinus communis 29929.m004641 I 0.941
SapurV1A.0056s0240 Salix purpurea SapurV1A.0056s0240 I 0.903
SapurV1A.1271s0060 Salix purpurea SapurV1A.1271s0060 I 0.903
VIT_01s0010g03710 Vitis vinifera VIT_01s0010g03710 I 0.907