Thhalv10002486m.g (Eutrema salsugineum)
Sigma 70

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04542 (Sigma70_r2) IPR007627 Thhalv10002486m.g T324252_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Thhalv10002486m Sigma 70 280 350

Links

Other Sigma 70 family TFs
Other Eutrema salsugineum TFs

76 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_32229 Aegilops tauschii F775_32229 N 0.817
AMTR_s00011p00266100 Amborella trichopoda AMTR_s00011p00266100 N 0.887
BRADI3G16040 Brachypodium distachyon BRADI3G16040 N 0.803
LPERR08G03850 Leersia perrieri LPERR08G03850 N 0.831
Lus10020365.g Linum usitatissimum Lus10020365.g N 0.800
mgf004750m Mimulus guttatus mgf004750m N 0.887
mgf015154m Mimulus guttatus mgf015154m N 0.746
mgf016433m Mimulus guttatus mgf016433m N 0.887
GSMUA_Achr11G08010_001 Musa acuminata GSMUA_Achr11G08010_001 N 0.845
OBART08G03910 Oryza barthii OBART08G03910 N 0.803
OB08G14150 Oryza brachyantha OB08G14150 N 0.803
ORGLA08G0033200 Oryza glaberrima ORGLA08G0033200 N 0.803
OGLUM08G04010 Oryza glumaepatula OGLUM08G04010 N 0.803
BGIOSGA028041 Oryza indica BGIOSGA028041 N 0.803
OLONG_000145 Oryza longistaminata OLONG_000145 N 0.803
OMERI08G04040 Oryza meridionalis OMERI08G04040 N 0.803
ONIVA08G03880 Oryza nivara ONIVA08G03880 N 0.803
OPUNC08G03810 Oryza punctata OPUNC08G03810 N 0.803
ORUFI08G04310 Oryza rufipogon ORUFI08G04310 N 0.803
OS08G0163400 Oryza sativa OS08G0163400 N 0.803
Pavir.Fb00544 Panicum virgatum Pavir.Fb00544 N 0.817
Pavir.J39657 Panicum virgatum Pavir.J39657 N 0.803
PDK_20s1319221g002 Phoenix dactylifera PDK_20s1319221g002 N 0.901
POPTR_0013s07290 Populus trichocarpa POPTR_0013s07290 N 0.901
Si013608m.g Setaria italica Si013608m.g N 0.803
Solyc03g097320.2 Solanum lycopersicum Solyc03g097320.2 N 0.901
Solyc06g072710.2 Solanum lycopersicum Solyc06g072710.2 N 0.901
PGSC0003DMG400026491 Solanum tuberosum PGSC0003DMG400026491 N 0.901
PGSC0003DMG400027038 Solanum tuberosum PGSC0003DMG400027038 N 0.901
Sb07g004340 Sorghum bicolor Sb07g004340 N 0.803
TriadG7110 Trichoplax adhaerens TriadG7110 N
Traes_7DL_21A260D0C Triticum aestivum Traes_7DL_21A260D0C N 0.817
Traes_7BL_0D553E505 Triticum aestivum Traes_7BL_0D553E505 N 0.800
Traes_7AL_33A778289 Triticum aestivum Traes_7AL_33A778289 N 0.817
TRIUR3_34525 Triticum urartu TRIUR3_34525 N 0.817
GRMZM2G543629 Zea mays GRMZM2G543629 N 0.789
GRMZM2G360541 Zea mays GRMZM2G360541 N 0.703
GRMZM2G006736 Zea mays GRMZM2G006736 N 0.831