HMGB1 (Arabidopsis thaliana)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 AT3G51880 T326480_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMG-1
M02720_2.00 		Pisum sativum
STYGTDHTY
RADHACRAS		 SELEX
Mathelier et al.(2014)
MA0044.1 		0.681 0.739
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AT3G51880.1 Sox 53 122
AT3G51880.2 Sox 53 122
AT3G51880.3 Sox 53 122
AT3G51880.4 Sox 53 122
AT3G51880.5 Sox 53 122

Links

Other Sox family TFs
Other Arabidopsis thaliana TFs

328 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ACYPI008613 Acyrthosiphon pisum ACYPI008613 I
AAEL008337 Aedes aegypti AAEL008337 I
TBX20 Anolis carolinensis ENSACAG00000007473 I
AALB000416 Anopheles albimanus AALB000416 I
AARA011014 Anopheles arabiensis AARA011014 I
AATE013317 Anopheles atroparvus AATE013317 I
ACOM023916 Anopheles coluzzii ACOM023916 I
ACUA008697 Anopheles culicifacies ACUA008697 I
ADIR010890 Anopheles dirus ADIR010890 I
AEPI001842 Anopheles epiroticus AEPI001842 I
AFAF008895 Anopheles farauti AFAF008895 I
AFUN010568 Anopheles funestus AFUN010568 I
AGAP008563 Anopheles gambiae AGAP008563 I
AGAP008567 Anopheles gambiae AGAP008567 I
AGAP008569 Anopheles gambiae AGAP008569 I
AMAM010638 Anopheles maculatus AMAM010638 I
AMEC012505 Anopheles melas AMEC012505 I
AMEC014683 Anopheles melas AMEC014683 I
AMEM005379 Anopheles merus AMEM005379 I
AMIN000992 Anopheles minimus AMIN000992 I
AQUA000256 Anopheles quadriannulatus AQUA000256 I
ASTEI05184 Anopheles stephensi ASTEI05184 I
ASTEI05186 Anopheles stephensi ASTEI05186 I
GB45715 Apis mellifera GB45715 I
ENSAMXG00000002328 Astyanax mexicanus ENSAMXG00000002328 I
ENSP00000386170-D1 Bos grunniens ENSP00000386170-D1 I
TBX20 Bos taurus ENSBTAG00000017541 I
e_gw.90.81.1 Branchiostoma floridae e_gw.90.81.1 I
TBX20 Callithrix jacchus ENSCJAG00000012232 I
TBX20 Canis familiaris ENSCAFG00000028536 I
TBX20 Cavia porcellus ENSCPOG00000015229 I
Cmyd_10006683 Chelonia mydas Cmyd_10006683 I
ENSCSAG00000014936 Chlorocebus sabaeus ENSCSAG00000014936 I
tbx20 Ciona intestinalis ENSCING00000005267 I
csin100383 Clonorchis sinensis csin100383 I
CGI_10020437 Crassostrea gigas CGI_10020437 I
tbx20 Danio rerio ENSDARG00000005150 I
DAPPUDRAFT_59354 Daphnia pulex DAPPUDRAFT_59354 I
DAPPUDRAFT_59366 Daphnia pulex DAPPUDRAFT_59366 I
TBX20 Dasypus novemcinctus ENSDNOG00000004142 I
GF14390 Drosophila ananassae FBgn0091417 I
GF14392 Drosophila ananassae FBgn0091419 I
GG25071 Drosophila erecta FBgn0117200 I
GG25073 Drosophila erecta FBgn0117202 I
H15 Drosophila melanogaster FBgn0016660 I
mid Drosophila melanogaster FBgn0261963 D
GI17985 Drosophila mojavensis FBgn0140725 I
GI17986 Drosophila mojavensis FBgn0140726 I
GL25841 Drosophila persimilis FBgn0163425 I
GL25845 Drosophila persimilis FBgn0163429 I
GA19742 Drosophila pseudoobscura FBgn0079738 I
GA25466 Drosophila pseudoobscura FBgn0246844 I
GM18547 Drosophila sechellia FBgn0173454 I
GM18548 Drosophila sechellia FBgn0173455 I
GD23340 Drosophila simulans FBgn0194726 I
GD23341 Drosophila simulans FBgn0194727 I
GJ19565 Drosophila virilis FBgn0206707 I
GJ19568 Drosophila virilis FBgn0206710 I
GK15084 Drosophila willistoni FBgn0217089 I
GK15086 Drosophila willistoni FBgn0217091 I
GE25406 Drosophila yakuba FBgn0242479 I
GE25417 Drosophila yakuba FBgn0242487 I
ECANG7_07504 Echinococcus canadensis ECANG7_07504 I
EmuJ_000377200 Echinococcus multilocularis EmuJ_000377200 I
TBX20 Echinops telfairi ENSETEG00000012771 I
TBX20 Equus caballus ENSECAG00000018182 I
TBX20 Erinaceus europaeus ENSEEUG00000010135 I
D915_09218 Fasciola hepatica D915_09218 I
TBX20 Felis catus ENSFCAG00000013004 I
ENSFALG00000002727 Ficedula albicollis ENSFALG00000002727 I
ENSGMOG00000012734 Gadus morhua ENSGMOG00000012734 I
ENSGALG00000012151 Gallus gallus ENSGALG00000012151 I
tbx20 Gasterosteus aculeatus ENSGACG00000012706 I
TBX20 Gorilla gorilla ENSGGOG00000026618 I
HMEL012426 Heliconius melpomene HMEL012426 I
HelroG134299 Helobdella robusta HelroG134299 I
HelroG98030 Helobdella robusta HelroG98030 I
TBX20 Homo sapiens ENSG00000164532 D
HDID_0000627201 Hymenolepis diminuta HDID_0000627201 I
HmN_000695600 Hymenolepis microstoma HmN_000695600 I
HNAJ_0000047101 Hymenolepis nana HNAJ_0000047101 I
ENSLACG00000010741 Latimeria chalumnae ENSLACG00000010741 I
ENSLOCG00000002483 Lepisosteus oculatus ENSLOCG00000002483 I
LotgiG129083 Lottia gigantea LotgiG129083 I
TBX20 Loxodonta africana ENSLAFG00000012790 I
LCUP000433 Lucilia cuprina LCUP000433 I
ENSP00000386170 Macaca fascicularis ENSP00000386170 I
TBX20 Macaca mulatta ENSMMUG00000012549 I
TBX20 Meleagris gallopavo ENSMGAG00000012040 I
MCOS_0000012101 Mesocestoides corti MCOS_0000012101 I
TBX20 Monodelphis domestica ENSMODG00000000085 I
MDOA009961 Musca domestica MDOA009961 I
MDOA010319 Musca domestica MDOA010319 I
ENSMPUG00000007865 Mustela putorius furo ENSMPUG00000007865 I
Tbx20 Mus musculus ENSMUSG00000031965 D
Myotis_brandtii_Tbx20_10020109 Myotis brandtii Myotis_brandtii_Tbx20_10020109 I
TBX20 Myotis lucifugus ENSMLUG00000015517 I
NV17864 Nasonia vitripennis NV17864 I
NV17866 Nasonia vitripennis NV17866 I
NEMVEDRAFT_v1g106123 Nematostella vectensis NEMVEDRAFT_v1g106123 I
NEMVEDRAFT_v1g117456 Nematostella vectensis NEMVEDRAFT_v1g117456 I
ENSNLEG00000001606 Nomascus leucogenys ENSNLEG00000001606 I
TBX20 Ochotona princeps ENSOPRG00000013626 I
Ocbimv22004458m.g Octopus bimaculoides Ocbimv22004458m.g I
Ogr18070 Ophisaurus gracilis Ogr18070 I
T265_12717 Opisthorchis viverrini T265_12717 I
ENSONIG00000006593 Oreochromis niloticus ENSONIG00000006593 I
ENSOANG00000006968 Ornithorhynchus anatinus ENSOANG00000006968 I
TBX20 Oryctolagus cuniculus ENSOCUG00000007422 I
TBX20 Otolemur garnettii ENSOGAG00000010338 I
ENSOARG00000005153 Ovis aries ENSOARG00000005153 I
TBX20 Pan troglodytes ENSPTRG00000019076 I
ENSPANG00000007074 Papio anubis ENSPANG00000007074 I
PTRK_0000394000 Parastrongyloides trichosuri PTRK_0000394000 N
ENSPSIG00000016149 Pelodiscus sinensis ENSPSIG00000016149 I
ENSPFOG00000012859 Poecilia formosa ENSPFOG00000012859 I
Pvit_04171 Pogona vitticeps Pvit_04171 I
ENSPPYG00000017641 Pongo abelii ENSPPYG00000017641 I
Tbx20 Rattus norvegicus ENSRNOG00000016181 I
Sakowv30029504m.g Saccoglossus kowalevskii Sakowv30029504m.g I
ENSSHAG00000016356 Sarcophilus harrisii ENSSHAG00000016356 I
Sjc_0040480 Schistosoma japonicum Sjc_0040480 I
Smp_003900 Schistosoma mansoni Smp_003900 I
SMU15033270 Schmidtea mediterranea SMU15033270 I
L898_g31228 Steinernema monticolum L898_g31228 N
SMAR008438 Strigamia maritima SMAR008438 I
SMAR015389 Strigamia maritima SMAR015389 I
SPAL_0000556200 Strongyloides papillosus SPAL_0000556200 N
SSTP_0001033100 Strongyloides stercoralis SSTP_0001033100 N
TBX20 Sus scrofa ENSSSCG00000016662 I
TASK_0000456901 Taenia asiatica TASK_0000456901 I
TBX20 Taeniopygia guttata ENSTGUG00000005375 I
tbx20 Takifugu rubripes ENSTRUG00000005667 I
tetur32g01390 Tetranychus urticae tetur32g01390 I
tetur32g01430 Tetranychus urticae tetur32g01430 I
tbx20 Tetraodon nigroviridis ENSTNIG00000005154 I
TC014296 Tribolium castaneum TC014296 I
D917_05246 Trichinella nativa D917_05246 I
EFV54310 Trichinella spiralis EFV54310 I
TMUE_s0080002600 Trichuris muris TMUE_s0080002600 I
TTRE_0000323501 Trichuris trichiura TTRE_0000323501 I
TBX20 Tursiops truncatus ENSTTRG00000016622 I
tbx20.L Xenopus laevis XB-GENE-865696 I
tbx20 Xenopus tropicalis XB-GENE-487334 I
ENSXMAG00000004704 Xiphophorus maculatus ENSXMAG00000004704 I
L798_07505 Zootermopsis nevadensis L798_07505 I