BRADI3G09690 (Brachypodium distachyon)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 BRADI3G09690 T326729_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.465 0.604
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.465 0.604
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI3G09690.1 Sox 209 274
BRADI3G09690.1 Sox 329 395
BRADI3G09690.1 Sox 454 522

Links

Other Sox family TFs
Other Brachypodium distachyon TFs

58 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BRADI1G36180 Brachypodium distachyon BRADI1G36180 N 0.000
MLOC_76302 Hordeum vulgare MLOC_76302 N 0.000
ORGLA06G0172100 Oryza glaberrima ORGLA06G0172100 N 0.000
BGIOSGA023255 Oryza indica BGIOSGA023255 N 0.000
OMERI06G21310 Oryza meridionalis OMERI06G21310 N 0.000
ONIVA06G24530 Oryza nivara ONIVA06G24530 N 0.000
OPUNC06G18940 Oryza punctata OPUNC06G18940 N 0.000
ORUFI06G22200 Oryza rufipogon ORUFI06G22200 N 0.000
Pavir.Da00564 Panicum virgatum Pavir.Da00564 N 0.000
Si008068m.g Setaria italica Si008068m.g N 0.000
Sb10g023950 Sorghum bicolor Sb10g023950 N 0.000
GRMZM2G114680 Zea mays GRMZM2G114680 N 0.000