GYMLUDRAFT_162520 (Gymnopus luxurians)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 GYMLUDRAFT_162520 T330462_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.498 0.406
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.498 0.406
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.498 0.406
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.498 0.406
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.498 0.406
SRY
M03525_2.00 		Homo sapiens
AACAATANCATTGTT
AACAATGNTATTGTT		 SELEX
Jolma et al.(2013)
SRY_1 		0.422 0.333
SRY
M03526_2.00 		Homo sapiens
AACAATHHNCATTGTT
AACAATGNDDATTGTT		 SELEX
Jolma et al.(2013)
SRY_2 		0.422 0.333
SRY
M03527_2.00 		Homo sapiens
TCAATAMCATTGA
TCAATGKTATTGA		 SELEX
Jolma et al.(2013)
SRY_3 		0.422 0.333
SRY
M03528_2.00 		Homo sapiens
TGAATANCATTCA
TGAATGNTATTCA		 SELEX
Jolma et al.(2013)
SRY_4 		0.422 0.333
SRY
M05898_2.00 		Homo sapiens
NACAATNV
BNATTGTN		 SMiLE-seq
Isakova et al.(2017)
SRY 		0.422 0.333
SRY
M02717_2.00 		Homo sapiens
NDWAACAAW
WTTGTWWHN		 SELEX
Mathelier et al.(2014)
MA0084.1 		0.422 0.333
SRY
M09398_2.00 		Homo sapiens
BWTTGTTWH
DWAACAAWV		 Misc
Kulakovskiy et al.(2013)
SRY_HUMAN.H11MO.0.B 		0.422 0.333
SRY
M11331_2.00 		Homo sapiens
AAWSWMM
KKWSWTT		 Transfac
Matys et al.(2006)
V$SRY_01 		0.422 0.333
SRY
M11332_2.00 		Homo sapiens
HBHWTTGTTWDN
NHWAACAAWDVD		 Transfac
Matys et al.(2006)
V$SRY_02 		0.422 0.333
SRY
M11333_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SRY_Q6 		0.422 0.333
SOX4
M01026_2.00 		Homo sapiens
AACAAWGR
YCWTTGTT		 PBM
Scharer et al.(2009)
Sox4 		0.416 0.391
Sox11
M00210_2.00 		Mus musculus
WTTGTBNNN
NNNVACAAW		 PBM
Badis et al.(2009)
Sox11_2266 		0.416 0.391
Sox4
M00213_2.00 		Mus musculus
NNVACAAWD
HWTTGTBNN		 PBM
Badis et al.(2009)
Sox4_2941 		0.416 0.391
SOX4
M03496_2.00 		Homo sapiens
NAACAATTKCAGTGTT
AACACTGMAATTGTTN		 SELEX
Jolma et al.(2013)
SOX4_1 		0.416 0.391
Sox11
M03541_2.00 		Mus musculus
AACAATTKCAGTGTT
AACACTGMAATTGTT		 SELEX
Jolma et al.(2013)
Sox11_1 		0.416 0.391
SOX4
M05765_2.00 		Homo sapiens
NRACAAWGVV
BBCWTTGTYN		 SELEX
Yin et al.(2017)
SOX4_eDBD_HT-SELEX 		0.416 0.391
SOX4
M09388_2.00 		Homo sapiens
BYCTTTGTYYBB
VVRRACAAAGRV		 Misc
Kulakovskiy et al.(2013)
SOX4_HUMAN.H11MO.0.B 		0.416 0.391
Sox4
M09410_2.00 		Mus musculus
BYCTTTGTYYBB
VVRRACAAAGRV		 Misc
Kulakovskiy et al.(2013)
SOX4_MOUSE.H11MO.0.A 		0.416 0.391
Sox4
M09641_2.00 		Mus musculus
BCWTTGTYCN
NGRACAAWGV		 Misc
Heinz et al.(2010)
proB-Sox4_GSE50066 		0.416 0.391
SOX11
M11326_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX11_Q6 		0.416 0.391
SOX4
M11301_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX4_Q3 		0.416 0.391
SOX4
M11302_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX4_Q5_02 		0.416 0.391
SOX4
M11303_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$SOX4_Q5 		0.416 0.391
SOX4
M05766_2.00 		Homo sapiens
NRACAAWGVV
BBCWTTGTYN		 SELEX
Yin et al.(2017)
SOX4_eDBD_Methyl-HT-SELEX 		0.416 0.391
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
KIK63578 Sox 24 93

Links

Other Sox family TFs
Other Gymnopus luxurians TFs

447 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_017_00590 Aquilegia coerulea Aquca_017_00590 N
fgenesh2_kg.1__235__AT1G03040.1 Arabidopsis lyrata fgenesh2_kg.1__235__AT1G03040.1 N
UNE12 Arabidopsis lyrata fgenesh2_kg.6__3435__AT4G02590.2 N
UNE12 Arabidopsis thaliana AT4G02590 N
AT1G03040 Arabidopsis thaliana AT1G03040 N
Bostr.2983s0202 Boechera stricta Bostr.2983s0202 N
Bo01031s030 Brassica oleracea Bo01031s030 N
Bo2g100750 Brassica oleracea Bo2g100750 N
Bo5g003580 Brassica oleracea Bo5g003580 N
Bo9g005930 Brassica oleracea Bo9g005930 N
Bra000872 Brassica rapa Bra000872 N
Bra018539 Brassica rapa Bra018539 N
Bra033368 Brassica rapa Bra033368 N
Bra036256 Brassica rapa Bra036256 N
PK20184.1 Cannabis sativa PK20184.1 N
PK25419.1 Cannabis sativa PK25419.1 N
Cagra.0897s0074 Capsella grandiflora Cagra.0897s0074 N
Cagra.0635s0023 Capsella grandiflora Cagra.0635s0023 N
Carubv10009831m.g Capsella rubella Carubv10009831m.g N
Carubv10001523m.g Capsella rubella Carubv10001523m.g N
evm.TU.supercontig_117.94 Carica papaya evm.TU.supercontig_117.94 N
evm.TU.supercontig_52.97 Carica papaya evm.TU.supercontig_52.97 N
Ca_12194 Cicer arietinum Ca_12194 N
Ca_07790 Cicer arietinum Ca_07790 N
Ca_03755 Cicer arietinum Ca_03755 N
Cla015040 Citrullus lanatus Cla015040 N
Cla011475 Citrullus lanatus Cla011475 N
Ciclev10001768m.g Citrus clementina Ciclev10001768m.g N
Ciclev10021443m.g Citrus clementina Ciclev10021443m.g N
orange1.1g022649m.g Citrus sinensis orange1.1g022649m.g N
Cucsa.289090 Cucumis sativus Cucsa.289090 N
Cucsa.388780 Cucumis sativus Cucsa.388780 N
Eucgr.B01487 Eucalyptus grandis Eucgr.B01487 N
Eucgr.H04337 Eucalyptus grandis Eucgr.H04337 N
Thhalv10028824m.g Eutrema salsugineum Thhalv10028824m.g N
Thhalv10008279m.g Eutrema salsugineum Thhalv10008279m.g N
gene08188-v1.0-hybrid Fragaria vesca gene08188-v1.0-hybrid N
gene16564-v1.0-hybrid Fragaria vesca gene16564-v1.0-hybrid N
GLYMA10G03690 Glycine max GLYMA10G03690 N
GLYMA10G30430 Glycine max GLYMA10G30430 N
GLYMA19G34360 Glycine max GLYMA19G34360 N
GLYMA03G31510 Glycine max GLYMA03G31510 N
GLYMA02G16110 Glycine max GLYMA02G16110 N
GLYMA20G36770 Glycine max GLYMA20G36770 N
Gorai.004G075200 Gossypium raimondii Gorai.004G075200 N
Gorai.001G242500 Gossypium raimondii Gorai.001G242500 N
Gorai.004G218900 Gossypium raimondii Gorai.004G218900 N
Gorai.007G141800 Gossypium raimondii Gorai.007G141800 N
Gorai.007G277200 Gossypium raimondii Gorai.007G277200 N
Lus10014726.g Linum usitatissimum Lus10014726.g N
Lus10018761.g Linum usitatissimum Lus10018761.g N
Lus10024850.g Linum usitatissimum Lus10024850.g N
chr5.LjT29J15.30.nc Lotus japonicus chr5.LjT29J15.30.nc N
chr1.CM0375.380.nc Lotus japonicus chr1.CM0375.380.nc N
MDP0000295593 Malus domestica MDP0000295593 N
MDP0000176749 Malus domestica MDP0000176749 N
cassava36725.valid.m1 Manihot esculenta cassava36725.valid.m1 N
MTR_1g070870 Medicago truncatula MTR_1g070870 N
MTR_1g080890 Medicago truncatula MTR_1g080890 N
mgf001465m Mimulus guttatus mgf001465m N
mg000214m Mimulus guttatus mg000214m N
GSMUA_Achr9G18080_001 Musa acuminata GSMUA_Achr9G18080_001 I
GSMUA_Achr3G10120_001 Musa acuminata GSMUA_Achr3G10120_001 I
POPTR_0005s23930 Populus trichocarpa POPTR_0005s23930 N
POPTR_0002s04620 Populus trichocarpa POPTR_0002s04620 N
Pm003525 Prunus mume Pm003525 N
Pm020229 Prunus mume Pm020229 N
PRUPE_ppa008172mg Prunus persica PRUPE_ppa008172mg N
PRUPE_ppa009299mg Prunus persica PRUPE_ppa009299mg N
29883.m001988 Ricinus communis 29883.m001988 N
SapurV1A.0860s0050 Salix purpurea SapurV1A.0860s0050 N
SapurV1A.0006s1290 Salix purpurea SapurV1A.0006s1290 N
Solyc03g005350.2 Solanum lycopersicum Solyc03g005350.2 N
Solyc09g065820.2 Solanum lycopersicum Solyc09g065820.2 N
Solyc09g083220.2 Solanum lycopersicum Solyc09g083220.2 N
PGSC0003DMG400019334 Solanum tuberosum PGSC0003DMG400019334 N
PGSC0003DMG400006089 Solanum tuberosum PGSC0003DMG400006089 N
PGSC0003DMG400013393 Solanum tuberosum PGSC0003DMG400013393 N
TCM_026346 Theobroma cacao TCM_026346 N
TCM_004217 Theobroma cacao TCM_004217 N
VIT_05s0020g04620 Vitis vinifera VIT_05s0020g04620 N
VIT_07s0141g00220 Vitis vinifera VIT_07s0141g00220 N
VIT_14s0030g02230 Vitis vinifera VIT_14s0030g02230 N