POPTR_0001s10410 (Populus trichocarpa)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 POPTR_0001s10410 T332115_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.510 0.688
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.510 0.688
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
POPTR_0001s10410.1 Sox 180 248
POPTR_0001s10410.1 Sox 299 365
POPTR_0001s10410.1 Sox 424 492

Links

Other Sox family TFs
Other Populus trichocarpa TFs

55 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
F775_06135 Aegilops tauschii F775_06135 N
BRADI1G45517 Brachypodium distachyon BRADI1G45517 N
Bo6g124000 Brassica oleracea Bo6g124000 N
Bra035129 Brassica rapa Bra035129 N
Carubv10014420m.g Capsella rubella Carubv10014420m.g N
MLOC_76431 Hordeum vulgare MLOC_76431 N
LPERR06G05590 Leersia perrieri LPERR06G05590 N
Lus10014044.g Linum usitatissimum Lus10014044.g N
MTR_3g101520 Medicago truncatula MTR_3g101520 N
mgf008645m Mimulus guttatus mgf008645m N
OB06G15600 Oryza brachyantha OB06G15600 N
ORGLA06G0055700 Oryza glaberrima ORGLA06G0055700 N
OGLUM06G06330 Oryza glumaepatula OGLUM06G06330 N
BGIOSGA022464 Oryza indica BGIOSGA022464 N
OLONG_013315 Oryza longistaminata OLONG_013315 N
OMERI06G07230 Oryza meridionalis OMERI06G07230 N
ONIVA06G07020 Oryza nivara ONIVA06G07020 N
ORUFI06G06290 Oryza rufipogon ORUFI06G06290 N
OS06G0194400 Oryza sativa OS06G0194400 N
Pavir.J28012 Panicum virgatum Pavir.J28012 N
Pavir.Fb00845 Panicum virgatum Pavir.Fb00845 N
PRUPE_ppb024440mg Prunus persica PRUPE_ppb024440mg N
Si014404m.g Setaria italica Si014404m.g N
Sb07g006170 Sorghum bicolor Sb07g006170 N
Traes_4AL_1D254E0E4 Triticum aestivum Traes_4AL_1D254E0E4 N
Traes_7AS_A4B5D1816 Triticum aestivum Traes_7AS_A4B5D1816 N
Traes_7DS_A234A13E1 Triticum aestivum Traes_7DS_A234A13E1 N
Traes_7DS_C57224E6E Triticum aestivum Traes_7DS_C57224E6E N
TRIUR3_03303 Triticum urartu TRIUR3_03303 N
GRMZM2G173321 Zea mays GRMZM2G173321 N
GRMZM2G106673 Zea mays GRMZM2G106673 N