SPU_025292 (Strongylocentrotus purpuratus)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 SPU_025292 T332757_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Cic
M00195_2.00 		Mus musculus
NNTGCTGABN
NVTCAGCANN		 PBM
Badis et al.(2009)
Cic_3454 		0.734 0.957
cic
M06452_2.00 		Drosophila melanogaster
YYCATTSA
TSAATGRR		 B1H
Zhu et al.(2011)
cic_SANGER_5_FBgn0028386 		0.686 0.783
gei-3
M00711_2.00 		Caenorhabditis elegans
NWNWMWDN
NHWKWNWN		 PBM
Narasimhan et al.(2015)
pTH10038 		0.679 0.812
BBX
M05763_2.00 		Homo sapiens
TGAWCDNYGWTCA
TGAWCRNHGWTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_HT-SELEX 		0.468 0.580
BBX
M05764_2.00 		Homo sapiens
TGAACDNYGTTCA
TGAACRNHGTTCA		 SELEX
Yin et al.(2017)
BBX_eDBD_Methyl-HT-SELEX 		0.468 0.580
bbx
M03975_2.00 		Drosophila melanogaster
NAACAATDNCATTGTTN
NAACAATGNHATTGTTN		 SELEX
Nitta et al.(2015)
bbx_1 		0.440 0.522
ROX1
M00070_2.00 		Saccharomyces cerevisiae
NRAACAATWNN
NNWATTGTTYN		 PBM
Badis et al.(2008)
ROX1_2099 		0.440 0.319
ROX1
M07498_2.00 		Saccharomyces cerevisiae
YYHATTGTTYTS
SARAACAATDRR		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0371.1 		0.440 0.319
ROX1
M08607_2.00 		Saccharomyces cerevisiae
BYATTGTN
NACAATRV		 Misc
DeBoer et al.(2011)
YPR065W_1396 		0.440 0.319
ROX1
M11346_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6_01 		0.440 0.319
ROX1
M11347_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ROX1_Q6 		0.440 0.319
Bbx
M00196_2.00 		Mus musculus
TTCATTGA
TCAATGAA		 PBM
Badis et al.(2009)
Bbx_3753 		0.434 0.565
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
SPU_025292-tr Sox 16 84

Links

Other Sox family TFs
Other Strongylocentrotus purpuratus TFs

476 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Alligator_sinensis_CCG005285.1 Alligator sinensis Alligator_sinensis_CCG005285.1 I
AMAG_17748 Allomyces macrogynus AMAG_17748 I
CGOC_0001018301 Cylicostephanus goldi CGOC_0001018301 I
si:dkey-43p13.5 Danio rerio ENSDARG00000104199 D
hbx10 Dictyostelium discoideum DDB_G0284293 D
GID1.0049906 Dictyostelium purpureum GID1.0049906 I
ENSGMOG00000003173 Gadus morhua ENSGMOG00000003173 I
si:dkey-43p13.5 Gasterosteus aculeatus ENSGACG00000014085 I
GYMLUDRAFT_72414 Gymnopus luxurians GYMLUDRAFT_72414 I
ENSLACG00000013029 Latimeria chalumnae ENSLACG00000013029 I
ENSLOCG00000001266 Lepisosteus oculatus ENSLOCG00000001266 I
LotgiG78457 Lottia gigantea LotgiG78457 I
fgeneshMC_pg.7_#_205 Mucor circinelloides fgeneshMC_pg.7_#_205 N
fgeneshMC_pg.2_#_8 Mucor circinelloides fgeneshMC_pg.2_#_8 I
NEPG_01845 Nematocida parisii ertm1 NEPG_01845 I
NERG_00880 Nematocida sp NERG_00880 I
ENSONIG00000001348 Oreochromis niloticus ENSONIG00000001348 I
si:dkey-43p13.5 Oryzias latipes ENSORLG00000004744 I
ENSPMAG00000000895 Petromyzon marinus ENSPMAG00000000895 I
PHACADRAFT_182311 Phanerochaete carnosa PHACADRAFT_182311 N
estExt_fgeneshPB_pg.C_40740 Phycomyces blakesleeanus estExt_fgeneshPB_pg.C_40740 I
e_gw1.10.235.1 Phycomyces blakesleeanus e_gw1.10.235.1 I
PLEOSDRAFT_1011447 Pleurotus ostreatus PLEOSDRAFT_1011447 I
ENSPFOG00000012326 Poecilia formosa ENSPFOG00000012326 I
EFA78939.1 Polysphondylium pallidum EFA78939.1 I
POSPLDRAFT_91424 Postia placenta POSPLDRAFT_91424 I
POSPLDRAFT_96600 Postia placenta POSPLDRAFT_96600 I
GLOINDRAFT_4254 Rhizophagus irregularis GLOINDRAFT_4254 I
GLOINDRAFT_59306 Rhizophagus irregularis GLOINDRAFT_59306 I
RO3G_08755 Rhizopus oryzae RO3G_08755 I
Sakowv30039034m.g Saccoglossus kowalevskii Sakowv30039034m.g I
SPPG_05154 Spizellomyces punctatus SPPG_05154 N
SPPG_03702 Spizellomyces punctatus SPPG_03702 I
L596_g24282 Steinernema carpocapsae L596_g24282 I
L889_g21326 Steinernema feltiae L889_g21326 I
L893_g29776 Steinernema glaseri L893_g29776 I
L898_g6571 Steinernema monticolum L898_g6571 I
L892_g28094 Steinernema scapterisci L892_g28094 I
MICALL2 Takifugu rubripes ENSTRUG00000013527 I
ENSTNIG00000018605 Tetraodon nigroviridis ENSTNIG00000018605 I
VICG_01325 Vittaforma corneae VICG_01325 I
XP_002942085 Xenopus tropicalis XP_002942085 I
ENSXMAG00000009360 Xiphophorus maculatus ENSXMAG00000009360 I