Cmyd_10010094 (Chelonia mydas)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cmyd_10010094 T333663_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.555 0.667
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10010094 Sox 155 223

Links

Other Sox family TFs
Other Chelonia mydas TFs

165 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10018084m.g Citrus clementina Ciclev10018084m.g N
orange1.1g043648m.g Citrus sinensis orange1.1g043648m.g N
Cucsa.142680 Cucumis sativus Cucsa.142680 N
gene23545-v1.0-hybrid Fragaria vesca gene23545-v1.0-hybrid N
Gorai.003G140100 Gossypium raimondii Gorai.003G140100 N
Gorai.004G227400 Gossypium raimondii Gorai.004G227400 N
MDP0000138209 Malus domestica MDP0000138209 N
MDP0000150696 Malus domestica MDP0000150696 N
MDP0000537221 Malus domestica MDP0000537221 N
cassava42755.valid.m1 Manihot esculenta cassava42755.valid.m1 N
POPTR_0004s20710 Populus trichocarpa POPTR_0004s20710 N
POPTR_0009s16010 Populus trichocarpa POPTR_0009s16010 N
Pm022953 Prunus mume Pm022953 N
SapurV1A.0561s0070 Salix purpurea SapurV1A.0561s0070 N
SapurV1A.3870s0010 Salix purpurea SapurV1A.3870s0010 N
TCM_042009 Theobroma cacao TCM_042009 N