Cmyd_10010094 (Chelonia mydas)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Cmyd_10010094 T333663_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.555 0.667
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cmyd_10010094 Sox 155 223

Links

Other Sox family TFs
Other Chelonia mydas TFs

165 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSPSIG00000013006 Pelodiscus sinensis ENSPSIG00000013006 I 0.741
HMG20A Anolis carolinensis ENSACAG00000011520 I 0.709
ENSAPLG00000015603 Anas platyrhynchos ENSAPLG00000015603 I 0.709
ENSFALG00000010751 Ficedula albicollis ENSFALG00000010751 I 0.709
ENSGALG00000002746 Gallus gallus ENSGALG00000002746 I 0.709
HMG20A Meleagris gallopavo ENSMGAG00000003179 I 0.709
HMG20A Taeniopygia guttata ENSTGUG00000003690 I 0.709
Aan_R011791 Calypte anna Aan_R011791 I 0.709
Afo_R007008 Aptenodytes forsteri Afo_R007008 I 0.709
Alligator_sinensis_CCG010545.1 Alligator sinensis Alligator_sinensis_CCG010545.1 I 0.709
Brh_R011859 Buceros rhinoceros Brh_R011859 I 0.709
Pvit_01997 Pogona vitticeps Pvit_01997 I 0.709
Tal_R006697 Tyto alba Tal_R006697 I 0.709
ENSAMEG00000008348 Ailuropoda melanoleuca ENSAMEG00000008348 I 0.701
HMG20A Bos taurus ENSBTAG00000020441 I 0.701
HMG20A Canis familiaris ENSCAFG00000018061 I 0.701
HMG20A Choloepus hoffmanni ENSCHOG00000012116 I 0.701
HMG20A Callithrix jacchus ENSCJAG00000011131 I 0.701
HMG20A Cavia porcellus ENSCPOG00000011704 I 0.701
ENSCSAG00000014734 Chlorocebus sabaeus ENSCSAG00000014734 I 0.701
HMG20A Dasypus novemcinctus ENSDNOG00000034143 I 0.701
Hmg20a Dipodomys ordii ENSDORG00000000623 I 0.701
HMG20A Erinaceus europaeus ENSEEUG00000004472 I 0.701
HMG20A Echinops telfairi ENSETEG00000015812 I 0.701
HMG20A Felis catus ENSFCAG00000022539 I 0.701
HMG20A Homo sapiens ENSG00000140382 I 0.701
HMG20A Gorilla gorilla ENSGGOG00000008439 I 0.701
HMG20A Loxodonta africana ENSLAFG00000018273 I 0.701
ENSMEUG00000016429 Macropus eugenii ENSMEUG00000016429 I 0.701
HMG20A Microcebus murinus ENSMICG00000011025 I 0.701
HMG20A Myotis lucifugus ENSMLUG00000011648 I 0.701
HMG20A Macaca mulatta ENSMMUG00000007430 I 0.701
HMG20A Monodelphis domestica ENSMODG00000012113 I 0.701
ENSMPUG00000017330 Mustela putorius furo ENSMPUG00000017330 I 0.701
Hmg20a Mus musculus ENSMUSG00000032329 I 0.701
ENSNLEG00000008357 Nomascus leucogenys ENSNLEG00000008357 I 0.701
HMG20A Ornithorhynchus anatinus ENSOANG00000009993 I 0.701
ENSOARG00000001765 Ovis aries ENSOARG00000001765 I 0.701
HMG20A Oryctolagus cuniculus ENSOCUG00000005648 I 0.701
HMG20A Otolemur garnettii ENSOGAG00000006630 I 0.701
ENSPANG00000015844 Papio anubis ENSPANG00000015844 I 0.701
HMG20A Procavia capensis ENSPCAG00000013879 I 0.701
ENSPPYG00000006683 Pongo abelii ENSPPYG00000006683 I 0.701
HMG20A Pan troglodytes ENSPTRG00000007326 I 0.701
Hmg20a Rattus norvegicus ENSRNOG00000016905 I 0.701
ENSSHAG00000012311 Sarcophilus harrisii ENSSHAG00000012311 I 0.701
HMG20A Sus scrofa ENSSSCG00000001871 I 0.701
ENSSSCG00000024002 Sus scrofa ENSSSCG00000024002 I 0.701
ENSSTOG00000013818 Ictidomys tridecemlineatus ENSSTOG00000013818 I 0.701
HMG20A Tupaia belangeri ENSTBEG00000015283 I 0.701
ENSTSYG00000003485 Tarsius syrichta ENSTSYG00000003485 I 0.701
HMG20A Tursiops truncatus ENSTTRG00000006500 I 0.701
HMG20A Vicugna pacos ENSVPAG00000010013 I 0.701
ENSP00000336856-D1 Bos grunniens ENSP00000336856-D1 I 0.701
ENSP00000371133 Macaca fascicularis ENSP00000371133 I 0.701
Myotis_brandtii_HMG20A_10005450 Myotis brandtii Myotis_brandtii_HMG20A_10005450 I 0.701
Gfo_R004366 Geospiza fortis Gfo_R004366 I 0.678
HMG20A Sorex araneus ENSSARG00000012609 I 0.660
hmg20a Danio rerio ENSDARG00000031198 I 0.642
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I 0.635
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I 0.627
ENSAMXG00000013048 Astyanax mexicanus ENSAMXG00000013048 I 0.607
hmg20a Gasterosteus aculeatus ENSGACG00000003466 I 0.607
ENSGMOG00000015452 Gadus morhua ENSGMOG00000015452 I 0.607
ENSONIG00000012862 Oreochromis niloticus ENSONIG00000012862 I 0.607
hmg20a Oryzias latipes ENSORLG00000001794 I 0.607
ENSPFOG00000014087 Poecilia formosa ENSPFOG00000014087 I 0.607
hmg20a Tetraodon nigroviridis ENSTNIG00000008460 I 0.607
hmg20a Takifugu rubripes ENSTRUG00000016127 I 0.607
ENSXMAG00000000587 Xiphophorus maculatus ENSXMAG00000000587 I 0.607
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I 0.603
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I 0.603
hmg20a Xenopus tropicalis XB-GENE-955353 I 0.594
hmg20a.L Xenopus laevis XB-GENE-955359 I 0.594
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I 0.582
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I 0.570
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.563
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.563
hmg20b Danio rerio ENSDARG00000042045 I 0.563
hmg20b.S Xenopus laevis XB-GENE-17338323 I 0.562
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.562
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.562
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I 0.561
Ocbimv22031259m.g Octopus bimaculoides Ocbimv22031259m.g I 0.560
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.555
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.555
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.555
HMG20B Canis familiaris ENSCAFG00000019215 I 0.555
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.555
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.555
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.555
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.555
HMG20B Felis catus ENSFCAG00000026167 I 0.555
HMG20B Homo sapiens ENSG00000064961 I 0.555
HMG20B Gallus gallus ENSGALG00000027838 I 0.555
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.555
HMG20B Loxodonta africana ENSLAFG00000007845 I 0.555
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.555
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.555
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.555
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.555
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.555
Hmg20b Mus musculus ENSMUSG00000020232 D 0.555
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.555
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.555
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.555
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.555
HMG20B Procavia capensis ENSPCAG00000010772 I 0.555
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.555
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.555
Hmg20b Rattus norvegicus ENSRNOG00000020601 I 0.555
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.555
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.555
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.555
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.555
Aan_R011684 Calypte anna Aan_R011684 I 0.555
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.555
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.555
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.555
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.555
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.555
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.555
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.553
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.553
hmg20b Oryzias latipes ENSORLG00000004640 I 0.553
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.553
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I 0.553
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.553
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.553
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I 0.549
TriadG23407 Trichoplax adhaerens TriadG23407 I 0.544
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I 0.541
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I 0.539
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I 0.539
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I 0.528
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I 0.525
LotgiG196090 Lottia gigantea LotgiG196090 I 0.525
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I 0.522
CapteG155070 Capitella teleta CapteG155070 I 0.510
L798_15457 Zootermopsis nevadensis L798_15457 I 0.510
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I 0.509
SMAR002604 Strigamia maritima SMAR002604 I 0.508
HMG20A Ochotona princeps ENSOPRG00000011000 I 0.507
MCINX003064 Melitaea cinxia MCINX003064 I 0.493
SMAR000790 Strigamia maritima SMAR000790 I 0.489
NV11068 Nasonia vitripennis NV11068 I 0.488
HHAL010521-PA Halyomorpha halys HHAL010521-PA I 0.482
CLEC002862 Cimex lectularius CLEC002862 I 0.479
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I 0.472
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I 0.472
BGIBMGA005325 Bombyx mori BGIBMGA005325 I 0.470
HMEL017569 Heliconius melpomene HMEL017569 I 0.470
GB41600 Apis mellifera GB41600 I 0.456
Hsal_13222--XP_625193.1_APIME Harpegnathos saltator Hsal_13222--XP_625193.1_APIME I 0.456
Cmyd_10009674 Chelonia mydas Cmyd_10009674 I 0.450
estExt_fgenesh2_pg.C_1350020 Branchiostoma floridae estExt_fgenesh2_pg.C_1350020 I 0.445
estExt_fgenesh2_pg.C_4800003 Branchiostoma floridae estExt_fgenesh2_pg.C_4800003 I 0.445
RPRC008043 Rhodnius prolixus RPRC008043 I 0.444
HMG20B Pteropus vampyrus ENSPVAG00000004300 I 0.437
YQE_04289 Dendroctonus ponderosae YQE_04289 N 0.427
KGM_20768 Danaus plexippus KGM_20768 N 0.424
ENSMMUG00000028932 Macaca mulatta ENSMMUG00000028932 I 0.423
ENSMMUP00000031974 Macaca fascicularis ENSMMUP00000031974 I 0.423
ENSCSAVG00000001086 Ciona savignyi ENSCSAVG00000001086 N 0.418
ACYPI002322 Acyrthosiphon pisum ACYPI002322 I 0.415