NEMVEDRAFT_v1g87244 (Nematostella vectensis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 NEMVEDRAFT_v1g87244 T331490_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.595 0.652
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
EDO47230 Sox 21 89

Links

Other Sox family TFs
Other Nematostella vectensis TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I 0.635
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I 0.622
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I 0.622
hmg20a Danio rerio ENSDARG00000031198 I 0.615
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I 0.612
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I 0.612
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I 0.601
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I 0.597
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.595
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.595
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.595
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.595
HMG20B Canis familiaris ENSCAFG00000019215 I 0.595
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.595
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.595
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.595
hmg20b Danio rerio ENSDARG00000042045 I 0.595
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.595
HMG20B Felis catus ENSFCAG00000026167 I 0.595
HMG20B Homo sapiens ENSG00000064961 I 0.595
HMG20B Gallus gallus ENSGALG00000027838 I 0.595
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.595
HMG20B Loxodonta africana ENSLAFG00000007845 I 0.595
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.595
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.595
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.595
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.595
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.595
Hmg20b Mus musculus ENSMUSG00000020232 D 0.595
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.595
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.595
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.595
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.595
HMG20B Procavia capensis ENSPCAG00000010772 I 0.595
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.595
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.595
Hmg20b Rattus norvegicus ENSRNOG00000020601 I 0.595
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.595
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.595
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.595
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.595
Aan_R011684 Calypte anna Aan_R011684 I 0.595
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.595
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.595
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.595
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.595
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.595
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.595
hmg20b.S Xenopus laevis XB-GENE-17338323 I 0.595
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.595
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.595
ENSAMXG00000013048 Astyanax mexicanus ENSAMXG00000013048 I 0.594
hmg20a Gasterosteus aculeatus ENSGACG00000003466 I 0.594
ENSONIG00000012862 Oreochromis niloticus ENSONIG00000012862 I 0.594
hmg20a Oryzias latipes ENSORLG00000001794 I 0.594
ENSPFOG00000014087 Poecilia formosa ENSPFOG00000014087 I 0.594
hmg20a Tetraodon nigroviridis ENSTNIG00000008460 I 0.594
hmg20a Takifugu rubripes ENSTRUG00000016127 I 0.594
ENSXMAG00000000587 Xiphophorus maculatus ENSXMAG00000000587 I 0.594
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I 0.591
ENSGMOG00000015452 Gadus morhua ENSGMOG00000015452 I 0.589
hmg20a Xenopus tropicalis XB-GENE-955353 I 0.589
hmg20a.L Xenopus laevis XB-GENE-955359 I 0.589
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.588
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I 0.581
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I 0.570
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I 0.567
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.567
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.561
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I 0.561
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.561
hmg20b Oryzias latipes ENSORLG00000004640 I 0.561
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.561
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.561
TriadG23407 Trichoplax adhaerens TriadG23407 I 0.561
SMAR000790 Strigamia maritima SMAR000790 I 0.560
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I 0.550
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I 0.550
HMG20A Anolis carolinensis ENSACAG00000011520 I 0.549
ENSAMEG00000008348 Ailuropoda melanoleuca ENSAMEG00000008348 I 0.549
ENSAPLG00000015603 Anas platyrhynchos ENSAPLG00000015603 I 0.549
HMG20A Bos taurus ENSBTAG00000020441 I 0.549
HMG20A Canis familiaris ENSCAFG00000018061 I 0.549
HMG20A Choloepus hoffmanni ENSCHOG00000012116 I 0.549
HMG20A Callithrix jacchus ENSCJAG00000011131 I 0.549
HMG20A Cavia porcellus ENSCPOG00000011704 I 0.549
ENSCSAG00000014734 Chlorocebus sabaeus ENSCSAG00000014734 I 0.549
HMG20A Dasypus novemcinctus ENSDNOG00000034143 I 0.549
Hmg20a Dipodomys ordii ENSDORG00000000623 I 0.549
HMG20A Erinaceus europaeus ENSEEUG00000004472 I 0.549
HMG20A Echinops telfairi ENSETEG00000015812 I 0.549
ENSFALG00000010751 Ficedula albicollis ENSFALG00000010751 I 0.549
HMG20A Felis catus ENSFCAG00000022539 I 0.549
HMG20A Homo sapiens ENSG00000140382 I 0.549
ENSGALG00000002746 Gallus gallus ENSGALG00000002746 I 0.549
HMG20A Gorilla gorilla ENSGGOG00000008439 I 0.549
HMG20A Loxodonta africana ENSLAFG00000018273 I 0.549
ENSMEUG00000016429 Macropus eugenii ENSMEUG00000016429 I 0.549
HMG20A Meleagris gallopavo ENSMGAG00000003179 I 0.549
HMG20A Microcebus murinus ENSMICG00000011025 I 0.549
HMG20A Myotis lucifugus ENSMLUG00000011648 I 0.549
HMG20A Macaca mulatta ENSMMUG00000007430 I 0.549
HMG20A Monodelphis domestica ENSMODG00000012113 I 0.549
ENSMPUG00000017330 Mustela putorius furo ENSMPUG00000017330 I 0.549
Hmg20a Mus musculus ENSMUSG00000032329 I 0.549
ENSNLEG00000008357 Nomascus leucogenys ENSNLEG00000008357 I 0.549
HMG20A Ornithorhynchus anatinus ENSOANG00000009993 I 0.549
ENSOARG00000001765 Ovis aries ENSOARG00000001765 I 0.549
HMG20A Oryctolagus cuniculus ENSOCUG00000005648 I 0.549
HMG20A Otolemur garnettii ENSOGAG00000006630 I 0.549
ENSPANG00000015844 Papio anubis ENSPANG00000015844 I 0.549
HMG20A Procavia capensis ENSPCAG00000013879 I 0.549
ENSPPYG00000006683 Pongo abelii ENSPPYG00000006683 I 0.549
ENSPSIG00000013006 Pelodiscus sinensis ENSPSIG00000013006 I 0.549
HMG20A Pan troglodytes ENSPTRG00000007326 I 0.549
Hmg20a Rattus norvegicus ENSRNOG00000016905 I 0.549
ENSSHAG00000012311 Sarcophilus harrisii ENSSHAG00000012311 I 0.549
HMG20A Sus scrofa ENSSSCG00000001871 I 0.549
ENSSSCG00000024002 Sus scrofa ENSSSCG00000024002 I 0.549
ENSSTOG00000013818 Ictidomys tridecemlineatus ENSSTOG00000013818 I 0.549
HMG20A Tupaia belangeri ENSTBEG00000015283 I 0.549
HMG20A Taeniopygia guttata ENSTGUG00000003690 I 0.549
ENSTSYG00000003485 Tarsius syrichta ENSTSYG00000003485 I 0.549
HMG20A Tursiops truncatus ENSTTRG00000006500 I 0.549
HMG20A Vicugna pacos ENSVPAG00000010013 I 0.549
Aan_R011791 Calypte anna Aan_R011791 I 0.549
Afo_R007008 Aptenodytes forsteri Afo_R007008 I 0.549
Alligator_sinensis_CCG010545.1 Alligator sinensis Alligator_sinensis_CCG010545.1 I 0.549
Brh_R011859 Buceros rhinoceros Brh_R011859 I 0.549
Cmyd_10010094 Chelonia mydas Cmyd_10010094 I 0.549
ENSP00000336856-D1 Bos grunniens ENSP00000336856-D1 I 0.549
ENSP00000371133 Macaca fascicularis ENSP00000371133 I 0.549
Myotis_brandtii_HMG20A_10005450 Myotis brandtii Myotis_brandtii_HMG20A_10005450 I 0.549
Pvit_01997 Pogona vitticeps Pvit_01997 I 0.549
Tal_R006697 Tyto alba Tal_R006697 I 0.549
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I 0.548
estExt_fgenesh2_pg.C_1350020 Branchiostoma floridae estExt_fgenesh2_pg.C_1350020 I 0.546
estExt_fgenesh2_pg.C_4800003 Branchiostoma floridae estExt_fgenesh2_pg.C_4800003 I 0.546
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I 0.522
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I 0.522
Gfo_R004366 Geospiza fortis Gfo_R004366 I 0.518
Ocbimv22031259m.g Octopus bimaculoides Ocbimv22031259m.g I 0.517
HMG20A Sorex araneus ENSSARG00000012609 I 0.508
Sakowv30005216m.g Saccoglossus kowalevskii Sakowv30005216m.g I 0.497
LotgiG196090 Lottia gigantea LotgiG196090 I 0.490
ENSMMUG00000028932 Macaca mulatta ENSMMUG00000028932 I 0.469
L798_15457 Zootermopsis nevadensis L798_15457 I 0.469
ENSMMUP00000031974 Macaca fascicularis ENSMMUP00000031974 I 0.469
Cmyd_10009674 Chelonia mydas Cmyd_10009674 I 0.460
CapteG191691 Capitella teleta CapteG191691 I 0.459
CGI_10028818 Crassostrea gigas CGI_10028818 I 0.458
SMAR002604 Strigamia maritima SMAR002604 I 0.458
CapteG155070 Capitella teleta CapteG155070 I 0.454
ENSMPUG00000007386 Mustela putorius furo ENSMPUG00000007386 I 0.450
NV11068 Nasonia vitripennis NV11068 I 0.447
LotgiG231408 Lottia gigantea LotgiG231408 I 0.444
HHAL010521-PA Halyomorpha halys HHAL010521-PA I 0.438
Hsal_13222--XP_625193.1_APIME Harpegnathos saltator Hsal_13222--XP_625193.1_APIME I 0.437
CLEC002862 Cimex lectularius CLEC002862 I 0.436
LDEC010438 Leptinotarsa decemlineata LDEC010438 I 0.429
AEPI008671 Anopheles epiroticus AEPI008671 N 0.427
HMEL017569 Heliconius melpomene HMEL017569 I 0.420
BGIBMGA005325 Bombyx mori BGIBMGA005325 I 0.416
MCINX003064 Melitaea cinxia MCINX003064 I 0.416
HMG20B Pteropus vampyrus ENSPVAG00000004300 I 0.415
GB41600 Apis mellifera GB41600 I 0.415