hmg20b.S (Xenopus laevis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 XB-GENE-17338323 T335066_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.703 0.855
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH63718 Sox 68 136

Links

Other Sox family TFs
Other Xenopus laevis TFs

171 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.741
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.741
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.735
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.735
HMG20B Gallus gallus ENSGALG00000027838 I 0.735
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.735
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.735
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.735
Aan_R011684 Calypte anna Aan_R011684 I 0.735
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.735
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.735
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.735
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.735
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.735
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.730
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.730
HMG20B Canis familiaris ENSCAFG00000019215 I 0.730
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.730
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.730
HMG20B Felis catus ENSFCAG00000026167 I 0.730
HMG20B Homo sapiens ENSG00000064961 I 0.730
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.730
HMG20B Loxodonta africana ENSLAFG00000007845 I 0.730
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.730
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.730
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.730
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.730
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.730
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.730
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.730
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.730
HMG20B Procavia capensis ENSPCAG00000010772 I 0.730
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.730
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.730
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.730
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.730
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.730
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.723
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.722
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.722
hmg20b Danio rerio ENSDARG00000042045 I 0.722
Hmg20b Mus musculus ENSMUSG00000020232 D 0.703
Hmg20b Rattus norvegicus ENSRNOG00000020601 I 0.703
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I 0.654
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.649
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.649
hmg20b Oryzias latipes ENSORLG00000004640 I 0.649
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.649
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I 0.649
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.649
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.649
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I 0.639
hmg20a Xenopus tropicalis XB-GENE-955353 I 0.633
hmg20a.L Xenopus laevis XB-GENE-955359 I 0.633
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I 0.631
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I 0.626
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I 0.626
hmg20a Danio rerio ENSDARG00000031198 I 0.624
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I 0.616
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I 0.604
ENSAMXG00000013048 Astyanax mexicanus ENSAMXG00000013048 I 0.602
hmg20a Gasterosteus aculeatus ENSGACG00000003466 I 0.602
ENSGMOG00000015452 Gadus morhua ENSGMOG00000015452 I 0.602
ENSONIG00000012862 Oreochromis niloticus ENSONIG00000012862 I 0.602
hmg20a Oryzias latipes ENSORLG00000001794 I 0.602
ENSPFOG00000014087 Poecilia formosa ENSPFOG00000014087 I 0.602
hmg20a Tetraodon nigroviridis ENSTNIG00000008460 I 0.602
hmg20a Takifugu rubripes ENSTRUG00000016127 I 0.602
ENSXMAG00000000587 Xiphophorus maculatus ENSXMAG00000000587 I 0.602
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I 0.595
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I 0.582
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I 0.575
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I 0.575
ENSAMEG00000008348 Ailuropoda melanoleuca ENSAMEG00000008348 I 0.570
HMG20A Bos taurus ENSBTAG00000020441 I 0.570
HMG20A Canis familiaris ENSCAFG00000018061 I 0.570
HMG20A Choloepus hoffmanni ENSCHOG00000012116 I 0.570
HMG20A Callithrix jacchus ENSCJAG00000011131 I 0.570
HMG20A Cavia porcellus ENSCPOG00000011704 I 0.570
ENSCSAG00000014734 Chlorocebus sabaeus ENSCSAG00000014734 I 0.570
HMG20A Dasypus novemcinctus ENSDNOG00000034143 I 0.570
Hmg20a Dipodomys ordii ENSDORG00000000623 I 0.570
HMG20A Erinaceus europaeus ENSEEUG00000004472 I 0.570
HMG20A Echinops telfairi ENSETEG00000015812 I 0.570
HMG20A Felis catus ENSFCAG00000022539 I 0.570
HMG20A Homo sapiens ENSG00000140382 I 0.570
HMG20A Gorilla gorilla ENSGGOG00000008439 I 0.570
HMG20A Loxodonta africana ENSLAFG00000018273 I 0.570
ENSMEUG00000016429 Macropus eugenii ENSMEUG00000016429 I 0.570
HMG20A Microcebus murinus ENSMICG00000011025 I 0.570
HMG20A Myotis lucifugus ENSMLUG00000011648 I 0.570
HMG20A Macaca mulatta ENSMMUG00000007430 I 0.570
HMG20A Monodelphis domestica ENSMODG00000012113 I 0.570
ENSMPUG00000017330 Mustela putorius furo ENSMPUG00000017330 I 0.570
Hmg20a Mus musculus ENSMUSG00000032329 I 0.570
ENSNLEG00000008357 Nomascus leucogenys ENSNLEG00000008357 I 0.570
HMG20A Ornithorhynchus anatinus ENSOANG00000009993 I 0.570
ENSOARG00000001765 Ovis aries ENSOARG00000001765 I 0.570
HMG20A Oryctolagus cuniculus ENSOCUG00000005648 I 0.570
HMG20A Otolemur garnettii ENSOGAG00000006630 I 0.570
ENSPANG00000015844 Papio anubis ENSPANG00000015844 I 0.570
HMG20A Procavia capensis ENSPCAG00000013879 I 0.570
ENSPPYG00000006683 Pongo abelii ENSPPYG00000006683 I 0.570
HMG20A Pan troglodytes ENSPTRG00000007326 I 0.570
Hmg20a Rattus norvegicus ENSRNOG00000016905 I 0.570
ENSSHAG00000012311 Sarcophilus harrisii ENSSHAG00000012311 I 0.570
HMG20A Sus scrofa ENSSSCG00000001871 I 0.570
ENSSSCG00000024002 Sus scrofa ENSSSCG00000024002 I 0.570
ENSSTOG00000013818 Ictidomys tridecemlineatus ENSSTOG00000013818 I 0.570
HMG20A Tupaia belangeri ENSTBEG00000015283 I 0.570
ENSTSYG00000003485 Tarsius syrichta ENSTSYG00000003485 I 0.570
HMG20A Tursiops truncatus ENSTTRG00000006500 I 0.570
HMG20A Vicugna pacos ENSVPAG00000010013 I 0.570
ENSP00000336856-D1 Bos grunniens ENSP00000336856-D1 I 0.570
ENSP00000371133 Macaca fascicularis ENSP00000371133 I 0.570
Myotis_brandtii_HMG20A_10005450 Myotis brandtii Myotis_brandtii_HMG20A_10005450 I 0.570
TriadG23407 Trichoplax adhaerens TriadG23407 I 0.567
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I 0.566
SMAR000790 Strigamia maritima SMAR000790 I 0.564
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I 0.563
HMG20A Anolis carolinensis ENSACAG00000011520 I 0.562
ENSAPLG00000015603 Anas platyrhynchos ENSAPLG00000015603 I 0.562
ENSFALG00000010751 Ficedula albicollis ENSFALG00000010751 I 0.562
ENSGALG00000002746 Gallus gallus ENSGALG00000002746 I 0.562
HMG20A Meleagris gallopavo ENSMGAG00000003179 I 0.562
ENSPSIG00000013006 Pelodiscus sinensis ENSPSIG00000013006 I 0.562
HMG20A Taeniopygia guttata ENSTGUG00000003690 I 0.562
Aan_R011791 Calypte anna Aan_R011791 I 0.562
Afo_R007008 Aptenodytes forsteri Afo_R007008 I 0.562
Alligator_sinensis_CCG010545.1 Alligator sinensis Alligator_sinensis_CCG010545.1 I 0.562
Brh_R011859 Buceros rhinoceros Brh_R011859 I 0.562
Cmyd_10010094 Chelonia mydas Cmyd_10010094 I 0.562
Pvit_01997 Pogona vitticeps Pvit_01997 I 0.562
Tal_R006697 Tyto alba Tal_R006697 I 0.562
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I 0.551
HMG20B Pteropus vampyrus ENSPVAG00000004300 I 0.549
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I 0.549
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I 0.549
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I 0.540
Gfo_R004366 Geospiza fortis Gfo_R004366 I 0.531
HMG20A Sorex araneus ENSSARG00000012609 I 0.530
ENSMMUG00000028932 Macaca mulatta ENSMMUG00000028932 I 0.528
ENSMMUP00000031974 Macaca fascicularis ENSMMUP00000031974 I 0.528
estExt_fgenesh2_pg.C_1350020 Branchiostoma floridae estExt_fgenesh2_pg.C_1350020 I 0.508
estExt_fgenesh2_pg.C_4800003 Branchiostoma floridae estExt_fgenesh2_pg.C_4800003 I 0.508
HMG20B Pan troglodytes ENSPTRG00000010268 I 0.494
Ocbimv22031259m.g Octopus bimaculoides Ocbimv22031259m.g I 0.493
CapteG155070 Capitella teleta CapteG155070 I 0.481
L798_15457 Zootermopsis nevadensis L798_15457 I 0.481
CLEC002862 Cimex lectularius CLEC002862 I 0.470
SMAR002604 Strigamia maritima SMAR002604 I 0.468
LotgiG196090 Lottia gigantea LotgiG196090 I 0.467
Cmyd_10009674 Chelonia mydas Cmyd_10009674 I 0.466
ENSMPUG00000007386 Mustela putorius furo ENSMPUG00000007386 I 0.462
HHAL010521-PA Halyomorpha halys HHAL010521-PA I 0.462
Hsal_13222--XP_625193.1_APIME Harpegnathos saltator Hsal_13222--XP_625193.1_APIME I 0.460
NV11068 Nasonia vitripennis NV11068 I 0.459
MCINX003064 Melitaea cinxia MCINX003064 I 0.452
CapteG191691 Capitella teleta CapteG191691 I 0.449
Sakowv30005216m.g Saccoglossus kowalevskii Sakowv30005216m.g I 0.442
BGIBMGA005325 Bombyx mori BGIBMGA005325 I 0.438
YQE_10385 Dendroctonus ponderosae YQE_10385 I 0.436
HMEL017569 Heliconius melpomene HMEL017569 I 0.433
HMG20A Ochotona princeps ENSOPRG00000011000 I 0.429
GB41600 Apis mellifera GB41600 I 0.428
RPRC008043 Rhodnius prolixus RPRC008043 I 0.424
CGI_10028818 Crassostrea gigas CGI_10028818 I 0.423
ACYPI002322 Acyrthosiphon pisum ACYPI002322 I 0.422
LDEC010438 Leptinotarsa decemlineata LDEC010438 I 0.421
LotgiG231408 Lottia gigantea LotgiG231408 I 0.415
AEPI008671 Anopheles epiroticus AEPI008671 N 0.415