hmg20b (Tetraodon nigroviridis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSTNIG00000010630 T329268_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.653 0.754
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000013543 Sox 47 115

Links

Other Sox family TFs
Other Tetraodon nigroviridis TFs

171 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.741
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.735
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.735
hmg20b Oryzias latipes ENSORLG00000004640 I 0.735
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.735
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.735
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I 0.717
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.653
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.653
HMG20B Canis familiaris ENSCAFG00000019215 I 0.653
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.653
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.653
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.653
HMG20B Felis catus ENSFCAG00000026167 I 0.653
HMG20B Homo sapiens ENSG00000064961 I 0.653
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.653
HMG20B Loxodonta africana ENSLAFG00000007845 I 0.653
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.653
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.653
Hmg20b Mus musculus ENSMUSG00000020232 D 0.653
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.653
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.653
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.653
HMG20B Procavia capensis ENSPCAG00000010772 I 0.653
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.653
Hmg20b Rattus norvegicus ENSRNOG00000020601 I 0.653
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.653
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.653
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.653
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.649
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.649
hmg20b Danio rerio ENSDARG00000042045 I 0.649
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.649
HMG20B Gallus gallus ENSGALG00000027838 I 0.649
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.649
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.649
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.649
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.649
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.649
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.649
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.649
Aan_R011684 Calypte anna Aan_R011684 I 0.649
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.649
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.649
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.649
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.649
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.649
hmg20b.S Xenopus laevis XB-GENE-17338323 I 0.649
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.649
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.649
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.646
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I 0.626
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I 0.626
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I 0.622
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I 0.622
hmg20a Danio rerio ENSDARG00000031198 I 0.615
hmg20a Xenopus tropicalis XB-GENE-955353 I 0.615
hmg20a.L Xenopus laevis XB-GENE-955359 I 0.615
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I 0.604
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I 0.600
ENSAMXG00000013048 Astyanax mexicanus ENSAMXG00000013048 I 0.593
hmg20a Gasterosteus aculeatus ENSGACG00000003466 I 0.593
ENSGMOG00000015452 Gadus morhua ENSGMOG00000015452 I 0.593
ENSONIG00000012862 Oreochromis niloticus ENSONIG00000012862 I 0.593
hmg20a Oryzias latipes ENSORLG00000001794 I 0.593
ENSPFOG00000014087 Poecilia formosa ENSPFOG00000014087 I 0.593
hmg20a Tetraodon nigroviridis ENSTNIG00000008460 I 0.593
hmg20a Takifugu rubripes ENSTRUG00000016127 I 0.593
ENSXMAG00000000587 Xiphophorus maculatus ENSXMAG00000000587 I 0.593
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I 0.587
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I 0.571
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I 0.571
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I 0.567
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I 0.565
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I 0.561
HMG20A Anolis carolinensis ENSACAG00000011520 I 0.553
ENSAMEG00000008348 Ailuropoda melanoleuca ENSAMEG00000008348 I 0.553
ENSAPLG00000015603 Anas platyrhynchos ENSAPLG00000015603 I 0.553
HMG20A Bos taurus ENSBTAG00000020441 I 0.553
HMG20A Canis familiaris ENSCAFG00000018061 I 0.553
HMG20A Choloepus hoffmanni ENSCHOG00000012116 I 0.553
HMG20A Callithrix jacchus ENSCJAG00000011131 I 0.553
HMG20A Cavia porcellus ENSCPOG00000011704 I 0.553
ENSCSAG00000014734 Chlorocebus sabaeus ENSCSAG00000014734 I 0.553
HMG20A Dasypus novemcinctus ENSDNOG00000034143 I 0.553
Hmg20a Dipodomys ordii ENSDORG00000000623 I 0.553
HMG20A Erinaceus europaeus ENSEEUG00000004472 I 0.553
HMG20A Echinops telfairi ENSETEG00000015812 I 0.553
ENSFALG00000010751 Ficedula albicollis ENSFALG00000010751 I 0.553
HMG20A Felis catus ENSFCAG00000022539 I 0.553
HMG20A Homo sapiens ENSG00000140382 I 0.553
ENSGALG00000002746 Gallus gallus ENSGALG00000002746 I 0.553
HMG20A Gorilla gorilla ENSGGOG00000008439 I 0.553
HMG20A Loxodonta africana ENSLAFG00000018273 I 0.553
ENSMEUG00000016429 Macropus eugenii ENSMEUG00000016429 I 0.553
HMG20A Meleagris gallopavo ENSMGAG00000003179 I 0.553
HMG20A Microcebus murinus ENSMICG00000011025 I 0.553
HMG20A Myotis lucifugus ENSMLUG00000011648 I 0.553
HMG20A Macaca mulatta ENSMMUG00000007430 I 0.553
HMG20A Monodelphis domestica ENSMODG00000012113 I 0.553
ENSMPUG00000017330 Mustela putorius furo ENSMPUG00000017330 I 0.553
Hmg20a Mus musculus ENSMUSG00000032329 I 0.553
ENSNLEG00000008357 Nomascus leucogenys ENSNLEG00000008357 I 0.553
HMG20A Ornithorhynchus anatinus ENSOANG00000009993 I 0.553
ENSOARG00000001765 Ovis aries ENSOARG00000001765 I 0.553
HMG20A Oryctolagus cuniculus ENSOCUG00000005648 I 0.553
HMG20A Otolemur garnettii ENSOGAG00000006630 I 0.553
ENSPANG00000015844 Papio anubis ENSPANG00000015844 I 0.553
HMG20A Procavia capensis ENSPCAG00000013879 I 0.553
ENSPPYG00000006683 Pongo abelii ENSPPYG00000006683 I 0.553
ENSPSIG00000013006 Pelodiscus sinensis ENSPSIG00000013006 I 0.553
HMG20A Pan troglodytes ENSPTRG00000007326 I 0.553
Hmg20a Rattus norvegicus ENSRNOG00000016905 I 0.553
ENSSHAG00000012311 Sarcophilus harrisii ENSSHAG00000012311 I 0.553
HMG20A Sus scrofa ENSSSCG00000001871 I 0.553
ENSSSCG00000024002 Sus scrofa ENSSSCG00000024002 I 0.553
ENSSTOG00000013818 Ictidomys tridecemlineatus ENSSTOG00000013818 I 0.553
HMG20A Tupaia belangeri ENSTBEG00000015283 I 0.553
HMG20A Taeniopygia guttata ENSTGUG00000003690 I 0.553
ENSTSYG00000003485 Tarsius syrichta ENSTSYG00000003485 I 0.553
HMG20A Tursiops truncatus ENSTTRG00000006500 I 0.553
HMG20A Vicugna pacos ENSVPAG00000010013 I 0.553
Aan_R011791 Calypte anna Aan_R011791 I 0.553
Afo_R007008 Aptenodytes forsteri Afo_R007008 I 0.553
Alligator_sinensis_CCG010545.1 Alligator sinensis Alligator_sinensis_CCG010545.1 I 0.553
Brh_R011859 Buceros rhinoceros Brh_R011859 I 0.553
Cmyd_10010094 Chelonia mydas Cmyd_10010094 I 0.553
ENSP00000336856-D1 Bos grunniens ENSP00000336856-D1 I 0.553
ENSP00000371133 Macaca fascicularis ENSP00000371133 I 0.553
Myotis_brandtii_HMG20A_10005450 Myotis brandtii Myotis_brandtii_HMG20A_10005450 I 0.553
Pvit_01997 Pogona vitticeps Pvit_01997 I 0.553
Tal_R006697 Tyto alba Tal_R006697 I 0.553
SMAR000790 Strigamia maritima SMAR000790 I 0.549
TriadG23407 Trichoplax adhaerens TriadG23407 I 0.549
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I 0.547
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I 0.539
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I 0.539
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I 0.524
Gfo_R004366 Geospiza fortis Gfo_R004366 I 0.522
HMG20A Sorex araneus ENSSARG00000012609 I 0.512
estExt_fgenesh2_pg.C_1350020 Branchiostoma floridae estExt_fgenesh2_pg.C_1350020 I 0.507
estExt_fgenesh2_pg.C_4800003 Branchiostoma floridae estExt_fgenesh2_pg.C_4800003 I 0.507
Ocbimv22031259m.g Octopus bimaculoides Ocbimv22031259m.g I 0.491
ENSMMUG00000028932 Macaca mulatta ENSMMUG00000028932 I 0.487
ENSMMUP00000031974 Macaca fascicularis ENSMMUP00000031974 I 0.487
HMG20B Pteropus vampyrus ENSPVAG00000004300 I 0.473
Sakowv30005216m.g Saccoglossus kowalevskii Sakowv30005216m.g I 0.473
L798_15457 Zootermopsis nevadensis L798_15457 I 0.472
LotgiG196090 Lottia gigantea LotgiG196090 I 0.464
YQE_10385 Dendroctonus ponderosae YQE_10385 I 0.461
HHAL010521-PA Halyomorpha halys HHAL010521-PA I 0.461
SMAR002604 Strigamia maritima SMAR002604 I 0.458
Cmyd_10009674 Chelonia mydas Cmyd_10009674 I 0.457
CapteG155070 Capitella teleta CapteG155070 I 0.453
NV11068 Nasonia vitripennis NV11068 I 0.453
CLEC002862 Cimex lectularius CLEC002862 I 0.453
LDEC010438 Leptinotarsa decemlineata LDEC010438 I 0.446
CGI_10028818 Crassostrea gigas CGI_10028818 I 0.437
ENSMPUG00000007386 Mustela putorius furo ENSMPUG00000007386 I 0.437
LotgiG231408 Lottia gigantea LotgiG231408 I 0.436
CapteG191691 Capitella teleta CapteG191691 I 0.435
RPRC008043 Rhodnius prolixus RPRC008043 I 0.435
MCINX003064 Melitaea cinxia MCINX003064 I 0.434
TC011144 Tribolium castaneum TC011144 N 0.424
ACYPI002322 Acyrthosiphon pisum ACYPI002322 I 0.422
HMG20A Ochotona princeps ENSOPRG00000011000 I 0.420
HMG20B Pan troglodytes ENSPTRG00000010268 I 0.418
GB41600 Apis mellifera GB41600 I 0.418
Hsal_13222--XP_625193.1_APIME Harpegnathos saltator Hsal_13222--XP_625193.1_APIME I 0.418
BGIBMGA005325 Bombyx mori BGIBMGA005325 I 0.416
HMEL017569 Heliconius melpomene HMEL017569 I 0.416