HMG20A (Vicugna pacos)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSVPAG00000010013 T329379_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.563 0.696
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSVPAP00000009316 Sox 103 171

Links

Other Sox family TFs
Other Vicugna pacos TFs

166 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000008348 Ailuropoda melanoleuca ENSAMEG00000008348 I 0.741
HMG20A Bos taurus ENSBTAG00000020441 I 0.741
HMG20A Canis familiaris ENSCAFG00000018061 I 0.741
HMG20A Choloepus hoffmanni ENSCHOG00000012116 I 0.741
HMG20A Callithrix jacchus ENSCJAG00000011131 I 0.741
HMG20A Cavia porcellus ENSCPOG00000011704 I 0.741
ENSCSAG00000014734 Chlorocebus sabaeus ENSCSAG00000014734 I 0.741
HMG20A Dasypus novemcinctus ENSDNOG00000034143 I 0.741
Hmg20a Dipodomys ordii ENSDORG00000000623 I 0.741
HMG20A Erinaceus europaeus ENSEEUG00000004472 I 0.741
HMG20A Echinops telfairi ENSETEG00000015812 I 0.741
HMG20A Felis catus ENSFCAG00000022539 I 0.741
HMG20A Homo sapiens ENSG00000140382 I 0.741
HMG20A Gorilla gorilla ENSGGOG00000008439 I 0.741
HMG20A Loxodonta africana ENSLAFG00000018273 I 0.741
ENSMEUG00000016429 Macropus eugenii ENSMEUG00000016429 I 0.741
HMG20A Microcebus murinus ENSMICG00000011025 I 0.741
HMG20A Myotis lucifugus ENSMLUG00000011648 I 0.741
HMG20A Macaca mulatta ENSMMUG00000007430 I 0.741
HMG20A Monodelphis domestica ENSMODG00000012113 I 0.741
ENSMPUG00000017330 Mustela putorius furo ENSMPUG00000017330 I 0.741
Hmg20a Mus musculus ENSMUSG00000032329 I 0.741
ENSNLEG00000008357 Nomascus leucogenys ENSNLEG00000008357 I 0.741
HMG20A Ornithorhynchus anatinus ENSOANG00000009993 I 0.741
ENSOARG00000001765 Ovis aries ENSOARG00000001765 I 0.741
HMG20A Oryctolagus cuniculus ENSOCUG00000005648 I 0.741
HMG20A Otolemur garnettii ENSOGAG00000006630 I 0.741
ENSPANG00000015844 Papio anubis ENSPANG00000015844 I 0.741
HMG20A Procavia capensis ENSPCAG00000013879 I 0.741
ENSPPYG00000006683 Pongo abelii ENSPPYG00000006683 I 0.741
HMG20A Pan troglodytes ENSPTRG00000007326 I 0.741
Hmg20a Rattus norvegicus ENSRNOG00000016905 I 0.741
ENSSHAG00000012311 Sarcophilus harrisii ENSSHAG00000012311 I 0.741
HMG20A Sus scrofa ENSSSCG00000001871 I 0.741
ENSSSCG00000024002 Sus scrofa ENSSSCG00000024002 I 0.741
ENSSTOG00000013818 Ictidomys tridecemlineatus ENSSTOG00000013818 I 0.741
HMG20A Tupaia belangeri ENSTBEG00000015283 I 0.741
ENSTSYG00000003485 Tarsius syrichta ENSTSYG00000003485 I 0.741
HMG20A Tursiops truncatus ENSTTRG00000006500 I 0.741
ENSP00000336856-D1 Bos grunniens ENSP00000336856-D1 I 0.741
ENSP00000371133 Macaca fascicularis ENSP00000371133 I 0.741
Myotis_brandtii_HMG20A_10005450 Myotis brandtii Myotis_brandtii_HMG20A_10005450 I 0.741
HMG20A Anolis carolinensis ENSACAG00000011520 I 0.733
ENSAPLG00000015603 Anas platyrhynchos ENSAPLG00000015603 I 0.733
ENSFALG00000010751 Ficedula albicollis ENSFALG00000010751 I 0.733
ENSGALG00000002746 Gallus gallus ENSGALG00000002746 I 0.733
HMG20A Meleagris gallopavo ENSMGAG00000003179 I 0.733
HMG20A Taeniopygia guttata ENSTGUG00000003690 I 0.733
Aan_R011791 Calypte anna Aan_R011791 I 0.733
Afo_R007008 Aptenodytes forsteri Afo_R007008 I 0.733
Alligator_sinensis_CCG010545.1 Alligator sinensis Alligator_sinensis_CCG010545.1 I 0.733
Brh_R011859 Buceros rhinoceros Brh_R011859 I 0.733
Pvit_01997 Pogona vitticeps Pvit_01997 I 0.733
Tal_R006697 Tyto alba Tal_R006697 I 0.733
Gfo_R004366 Geospiza fortis Gfo_R004366 I 0.702
ENSPSIG00000013006 Pelodiscus sinensis ENSPSIG00000013006 I 0.701
HMG20A Sorex araneus ENSSARG00000012609 I 0.701
Cmyd_10010094 Chelonia mydas Cmyd_10010094 I 0.701
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I 0.668
hmg20a Danio rerio ENSDARG00000031198 I 0.666
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I 0.659
hmg20a Xenopus tropicalis XB-GENE-955353 I 0.634
hmg20a.L Xenopus laevis XB-GENE-955359 I 0.634
ENSAMXG00000013048 Astyanax mexicanus ENSAMXG00000013048 I 0.631
hmg20a Gasterosteus aculeatus ENSGACG00000003466 I 0.631
ENSGMOG00000015452 Gadus morhua ENSGMOG00000015452 I 0.631
ENSONIG00000012862 Oreochromis niloticus ENSONIG00000012862 I 0.631
hmg20a Oryzias latipes ENSORLG00000001794 I 0.631
ENSPFOG00000014087 Poecilia formosa ENSPFOG00000014087 I 0.631
hmg20a Tetraodon nigroviridis ENSTNIG00000008460 I 0.631
hmg20a Takifugu rubripes ENSTRUG00000016127 I 0.631
ENSXMAG00000000587 Xiphophorus maculatus ENSXMAG00000000587 I 0.631
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I 0.612
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I 0.612
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I 0.590
hmg20b.S Xenopus laevis XB-GENE-17338323 I 0.570
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.570
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.570
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.563
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.563
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.563
HMG20B Canis familiaris ENSCAFG00000019215 I 0.563
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.563
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.563
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.563
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.563
HMG20B Felis catus ENSFCAG00000026167 I 0.563
HMG20B Homo sapiens ENSG00000064961 I 0.563
HMG20B Gallus gallus ENSGALG00000027838 I 0.563
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.563
HMG20B Loxodonta africana ENSLAFG00000007845 I 0.563
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.563
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.563
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.563
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.563
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.563
Hmg20b Mus musculus ENSMUSG00000020232 D 0.563
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.563
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.563
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.563
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.563
HMG20B Procavia capensis ENSPCAG00000010772 I 0.563
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.563
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.563
Hmg20b Rattus norvegicus ENSRNOG00000020601 I 0.563
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.563
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.563
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.563
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.563
Aan_R011684 Calypte anna Aan_R011684 I 0.563
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.563
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.563
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.563
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.563
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.563
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.563
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I 0.562
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.555
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.555
hmg20b Danio rerio ENSDARG00000042045 I 0.555
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.553
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I 0.553
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.553
hmg20b Oryzias latipes ENSORLG00000004640 I 0.553
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.553
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I 0.553
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.553
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.553
TriadG23407 Trichoplax adhaerens TriadG23407 I 0.553
Ocbimv22031259m.g Octopus bimaculoides Ocbimv22031259m.g I 0.552
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I 0.549
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I 0.547
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I 0.547
HMG20A Ochotona princeps ENSOPRG00000011000 I 0.539
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I 0.536
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I 0.533
LotgiG196090 Lottia gigantea LotgiG196090 I 0.525
CapteG155070 Capitella teleta CapteG155070 I 0.518
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I 0.516
SMAR002604 Strigamia maritima SMAR002604 I 0.516
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I 0.514
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I 0.509
L798_15457 Zootermopsis nevadensis L798_15457 I 0.502
MCINX003064 Melitaea cinxia MCINX003064 I 0.501
SMAR000790 Strigamia maritima SMAR000790 I 0.489
HHAL010521-PA Halyomorpha halys HHAL010521-PA I 0.482
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I 0.480
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I 0.480
NV11068 Nasonia vitripennis NV11068 I 0.479
CLEC002862 Cimex lectularius CLEC002862 I 0.479
BGIBMGA005325 Bombyx mori BGIBMGA005325 I 0.478
HMEL017569 Heliconius melpomene HMEL017569 I 0.478
Cmyd_10009674 Chelonia mydas Cmyd_10009674 I 0.458
GB41600 Apis mellifera GB41600 I 0.448
Hsal_13222--XP_625193.1_APIME Harpegnathos saltator Hsal_13222--XP_625193.1_APIME I 0.448
HMG20B Pteropus vampyrus ENSPVAG00000004300 I 0.445
estExt_fgenesh2_pg.C_1350020 Branchiostoma floridae estExt_fgenesh2_pg.C_1350020 I 0.445
estExt_fgenesh2_pg.C_4800003 Branchiostoma floridae estExt_fgenesh2_pg.C_4800003 I 0.445
RPRC008043 Rhodnius prolixus RPRC008043 I 0.444
YQE_04289 Dendroctonus ponderosae YQE_04289 N 0.435
KGM_20768 Danaus plexippus KGM_20768 N 0.432
ENSMMUG00000028932 Macaca mulatta ENSMMUG00000028932 I 0.423
ENSMMUP00000031974 Macaca fascicularis ENSMMUP00000031974 I 0.423
HelroG189739 Helobdella robusta HelroG189739 N 0.416
ACYPI002322 Acyrthosiphon pisum ACYPI002322 I 0.415
ENSCING00000018888 Ciona intestinalis ENSCING00000018888 N 0.415