hmg20a (Xenopus tropicalis)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 XB-GENE-955353 T335119_2.00 Misc (2018-Jan-19)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.626 0.710
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
AAH75543 Sox 101 169

Links

Other Sox family TFs
Other Xenopus tropicalis TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
hmg20a.L Xenopus laevis XB-GENE-955359 I 0.741
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I 0.708
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I 0.699
hmg20a Danio rerio ENSDARG00000031198 I 0.692
ENSAMXG00000013048 Astyanax mexicanus ENSAMXG00000013048 I 0.671
hmg20a Gasterosteus aculeatus ENSGACG00000003466 I 0.671
ENSONIG00000012862 Oreochromis niloticus ENSONIG00000012862 I 0.671
hmg20a Oryzias latipes ENSORLG00000001794 I 0.671
ENSPFOG00000014087 Poecilia formosa ENSPFOG00000014087 I 0.671
hmg20a Tetraodon nigroviridis ENSTNIG00000008460 I 0.671
hmg20a Takifugu rubripes ENSTRUG00000016127 I 0.671
ENSXMAG00000000587 Xiphophorus maculatus ENSXMAG00000000587 I 0.671
ENSGMOG00000015452 Gadus morhua ENSGMOG00000015452 I 0.666
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I 0.653
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I 0.653
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I 0.636
ENSAMEG00000008348 Ailuropoda melanoleuca ENSAMEG00000008348 I 0.634
HMG20A Bos taurus ENSBTAG00000020441 I 0.634
HMG20A Canis familiaris ENSCAFG00000018061 I 0.634
HMG20A Choloepus hoffmanni ENSCHOG00000012116 I 0.634
HMG20A Callithrix jacchus ENSCJAG00000011131 I 0.634
HMG20A Cavia porcellus ENSCPOG00000011704 I 0.634
ENSCSAG00000014734 Chlorocebus sabaeus ENSCSAG00000014734 I 0.634
HMG20A Dasypus novemcinctus ENSDNOG00000034143 I 0.634
Hmg20a Dipodomys ordii ENSDORG00000000623 I 0.634
HMG20A Erinaceus europaeus ENSEEUG00000004472 I 0.634
HMG20A Echinops telfairi ENSETEG00000015812 I 0.634
HMG20A Felis catus ENSFCAG00000022539 I 0.634
HMG20A Homo sapiens ENSG00000140382 I 0.634
HMG20A Gorilla gorilla ENSGGOG00000008439 I 0.634
HMG20A Loxodonta africana ENSLAFG00000018273 I 0.634
ENSMEUG00000016429 Macropus eugenii ENSMEUG00000016429 I 0.634
HMG20A Microcebus murinus ENSMICG00000011025 I 0.634
HMG20A Myotis lucifugus ENSMLUG00000011648 I 0.634
HMG20A Macaca mulatta ENSMMUG00000007430 I 0.634
HMG20A Monodelphis domestica ENSMODG00000012113 I 0.634
ENSMPUG00000017330 Mustela putorius furo ENSMPUG00000017330 I 0.634
Hmg20a Mus musculus ENSMUSG00000032329 I 0.634
ENSNLEG00000008357 Nomascus leucogenys ENSNLEG00000008357 I 0.634
HMG20A Ornithorhynchus anatinus ENSOANG00000009993 I 0.634
ENSOARG00000001765 Ovis aries ENSOARG00000001765 I 0.634
HMG20A Oryctolagus cuniculus ENSOCUG00000005648 I 0.634
HMG20A Otolemur garnettii ENSOGAG00000006630 I 0.634
ENSPANG00000015844 Papio anubis ENSPANG00000015844 I 0.634
HMG20A Procavia capensis ENSPCAG00000013879 I 0.634
ENSPPYG00000006683 Pongo abelii ENSPPYG00000006683 I 0.634
HMG20A Pan troglodytes ENSPTRG00000007326 I 0.634
Hmg20a Rattus norvegicus ENSRNOG00000016905 I 0.634
ENSSHAG00000012311 Sarcophilus harrisii ENSSHAG00000012311 I 0.634
HMG20A Sus scrofa ENSSSCG00000001871 I 0.634
ENSSSCG00000024002 Sus scrofa ENSSSCG00000024002 I 0.634
ENSSTOG00000013818 Ictidomys tridecemlineatus ENSSTOG00000013818 I 0.634
HMG20A Tupaia belangeri ENSTBEG00000015283 I 0.634
ENSTSYG00000003485 Tarsius syrichta ENSTSYG00000003485 I 0.634
HMG20A Tursiops truncatus ENSTTRG00000006500 I 0.634
HMG20A Vicugna pacos ENSVPAG00000010013 I 0.634
ENSP00000336856-D1 Bos grunniens ENSP00000336856-D1 I 0.634
ENSP00000371133 Macaca fascicularis ENSP00000371133 I 0.634
Myotis_brandtii_HMG20A_10005450 Myotis brandtii Myotis_brandtii_HMG20A_10005450 I 0.634
hmg20b.S Xenopus laevis XB-GENE-17338323 I 0.633
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.633
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.633
HMG20A Anolis carolinensis ENSACAG00000011520 I 0.626
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.626
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.626
ENSAPLG00000015603 Anas platyrhynchos ENSAPLG00000015603 I 0.626
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.626
HMG20B Canis familiaris ENSCAFG00000019215 I 0.626
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.626
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.626
ENSFALG00000010751 Ficedula albicollis ENSFALG00000010751 I 0.626
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.626
HMG20B Felis catus ENSFCAG00000026167 I 0.626
HMG20B Homo sapiens ENSG00000064961 I 0.626
ENSGALG00000002746 Gallus gallus ENSGALG00000002746 I 0.626
HMG20B Gallus gallus ENSGALG00000027838 I 0.626
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.626
HMG20B Loxodonta africana ENSLAFG00000007845 I 0.626
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.626
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.626
HMG20A Meleagris gallopavo ENSMGAG00000003179 I 0.626
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.626
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.626
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.626
Hmg20b Mus musculus ENSMUSG00000020232 D 0.626
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.626
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.626
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.626
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.626
HMG20B Procavia capensis ENSPCAG00000010772 I 0.626
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.626
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.626
Hmg20b Rattus norvegicus ENSRNOG00000020601 I 0.626
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.626
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.626
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.626
HMG20A Taeniopygia guttata ENSTGUG00000003690 I 0.626
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.626
Aan_R011684 Calypte anna Aan_R011684 I 0.626
Aan_R011791 Calypte anna Aan_R011791 I 0.626
Afo_R007008 Aptenodytes forsteri Afo_R007008 I 0.626
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.626
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.626
Alligator_sinensis_CCG010545.1 Alligator sinensis Alligator_sinensis_CCG010545.1 I 0.626
Brh_R011859 Buceros rhinoceros Brh_R011859 I 0.626
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.626
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.626
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.626
Pvit_01997 Pogona vitticeps Pvit_01997 I 0.626
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.626
Tal_R006697 Tyto alba Tal_R006697 I 0.626
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I 0.623
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I 0.623
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.619
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.618
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.618
hmg20b Danio rerio ENSDARG00000042045 I 0.618
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I 0.616
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.615
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.615
hmg20b Oryzias latipes ENSORLG00000004640 I 0.615
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.615
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I 0.615
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.615
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.615
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I 0.611
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I 0.609
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I 0.595
Gfo_R004366 Geospiza fortis Gfo_R004366 I 0.595
ENSPSIG00000013006 Pelodiscus sinensis ENSPSIG00000013006 I 0.594
HMG20A Sorex araneus ENSSARG00000012609 I 0.594
Cmyd_10010094 Chelonia mydas Cmyd_10010094 I 0.594
TriadG23407 Trichoplax adhaerens TriadG23407 I 0.593
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I 0.589
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I 0.583
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I 0.581
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I 0.581
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I 0.572
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I 0.565
SMAR000790 Strigamia maritima SMAR000790 I 0.558
L798_15457 Zootermopsis nevadensis L798_15457 I 0.547
Ocbimv22031259m.g Octopus bimaculoides Ocbimv22031259m.g I 0.530
estExt_fgenesh2_pg.C_1350020 Branchiostoma floridae estExt_fgenesh2_pg.C_1350020 I 0.518
estExt_fgenesh2_pg.C_4800003 Branchiostoma floridae estExt_fgenesh2_pg.C_4800003 I 0.518
LotgiG196090 Lottia gigantea LotgiG196090 I 0.503
SMAR002604 Strigamia maritima SMAR002604 I 0.500
CapteG155070 Capitella teleta CapteG155070 I 0.496
HHAL010521-PA Halyomorpha halys HHAL010521-PA I 0.494
NV11068 Nasonia vitripennis NV11068 I 0.491
CLEC002862 Cimex lectularius CLEC002862 I 0.491
MCINX003064 Melitaea cinxia MCINX003064 I 0.490
ENSMMUG00000028932 Macaca mulatta ENSMMUG00000028932 I 0.485
ENSMMUP00000031974 Macaca fascicularis ENSMMUP00000031974 I 0.485
HMEL017569 Heliconius melpomene HMEL017569 I 0.476
Sakowv30005216m.g Saccoglossus kowalevskii Sakowv30005216m.g I 0.474
HMG20A Ochotona princeps ENSOPRG00000011000 I 0.472
BGIBMGA005325 Bombyx mori BGIBMGA005325 I 0.471
CapteG191691 Capitella teleta CapteG191691 I 0.465
Cmyd_10009674 Chelonia mydas Cmyd_10009674 I 0.461
GB41600 Apis mellifera GB41600 I 0.459
Hsal_13222--XP_625193.1_APIME Harpegnathos saltator Hsal_13222--XP_625193.1_APIME I 0.459
RPRC008043 Rhodnius prolixus RPRC008043 I 0.456
LDEC010438 Leptinotarsa decemlineata LDEC010438 I 0.448
HMG20B Pteropus vampyrus ENSPVAG00000004300 I 0.446
DAPPUDRAFT_189566 Daphnia pulex DAPPUDRAFT_189566 N 0.444
ENSMPUG00000007386 Mustela putorius furo ENSMPUG00000007386 I 0.441
CGI_10028818 Crassostrea gigas CGI_10028818 I 0.440
KGM_20768 Danaus plexippus KGM_20768 N 0.436
ACYPI002322 Acyrthosiphon pisum ACYPI002322 I 0.433
LotgiG231408 Lottia gigantea LotgiG231408 I 0.431
HelroG189739 Helobdella robusta HelroG189739 N 0.421
TC011144 Tribolium castaneum TC011144 N 0.419
PHUM514030 Pediculus humanus PHUM514030 N 0.416