hmg20b (Danio rerio)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSDARG00000042045 T327857_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.694 0.783
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSDARP00000061616 Sox 53 121
ENSDARP00000139903 Sox 53 121

Links

Other Sox family TFs
Other Danio rerio TFs

171 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.741
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.730
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.726
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.726
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.726
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.726
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.722
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.722
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.722
HMG20B Canis familiaris ENSCAFG00000019215 I 0.722
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.722
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.722
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.722
HMG20B Felis catus ENSFCAG00000026167 I 0.722
HMG20B Homo sapiens ENSG00000064961 I 0.722
HMG20B Gallus gallus ENSGALG00000027838 I 0.722
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.722
HMG20B Loxodonta africana ENSLAFG00000007845 I 0.722
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.722
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.722
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.722
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.722
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.722
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.722
HMG20B Procavia capensis ENSPCAG00000010772 I 0.722
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.722
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.722
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.722
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.722
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.722
Aan_R011684 Calypte anna Aan_R011684 I 0.722
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.722
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.722
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.722
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.722
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.722
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.722
hmg20b.S Xenopus laevis XB-GENE-17338323 I 0.722
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.722
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.722
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.715
Hmg20b Mus musculus ENSMUSG00000020232 D 0.694
Hmg20b Rattus norvegicus ENSRNOG00000020601 I 0.694
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I 0.657
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.655
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.655
hmg20b Oryzias latipes ENSORLG00000004640 I 0.655
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.655
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.655
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I 0.649
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.649
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I 0.632
hmg20a Danio rerio ENSDARG00000031198 I 0.625
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I 0.625
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I 0.625
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I 0.624
hmg20a Xenopus tropicalis XB-GENE-955353 I 0.618
hmg20a.L Xenopus laevis XB-GENE-955359 I 0.618
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I 0.613
ENSAMXG00000013048 Astyanax mexicanus ENSAMXG00000013048 I 0.604
hmg20a Gasterosteus aculeatus ENSGACG00000003466 I 0.604
ENSGMOG00000015452 Gadus morhua ENSGMOG00000015452 I 0.604
ENSONIG00000012862 Oreochromis niloticus ENSONIG00000012862 I 0.604
hmg20a Oryzias latipes ENSORLG00000001794 I 0.604
ENSPFOG00000014087 Poecilia formosa ENSPFOG00000014087 I 0.604
hmg20a Tetraodon nigroviridis ENSTNIG00000008460 I 0.604
hmg20a Takifugu rubripes ENSTRUG00000016127 I 0.604
ENSXMAG00000000587 Xiphophorus maculatus ENSXMAG00000000587 I 0.604
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I 0.595
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I 0.590
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I 0.589
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I 0.574
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I 0.566
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I 0.566
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I 0.565
HMG20A Anolis carolinensis ENSACAG00000011520 I 0.563
ENSAPLG00000015603 Anas platyrhynchos ENSAPLG00000015603 I 0.563
ENSFALG00000010751 Ficedula albicollis ENSFALG00000010751 I 0.563
ENSGALG00000002746 Gallus gallus ENSGALG00000002746 I 0.563
HMG20A Meleagris gallopavo ENSMGAG00000003179 I 0.563
ENSPSIG00000013006 Pelodiscus sinensis ENSPSIG00000013006 I 0.563
HMG20A Taeniopygia guttata ENSTGUG00000003690 I 0.563
Aan_R011791 Calypte anna Aan_R011791 I 0.563
Afo_R007008 Aptenodytes forsteri Afo_R007008 I 0.563
Alligator_sinensis_CCG010545.1 Alligator sinensis Alligator_sinensis_CCG010545.1 I 0.563
Brh_R011859 Buceros rhinoceros Brh_R011859 I 0.563
Cmyd_10010094 Chelonia mydas Cmyd_10010094 I 0.563
Pvit_01997 Pogona vitticeps Pvit_01997 I 0.563
Tal_R006697 Tyto alba Tal_R006697 I 0.563
SMAR000790 Strigamia maritima SMAR000790 I 0.561
ENSAMEG00000008348 Ailuropoda melanoleuca ENSAMEG00000008348 I 0.555
HMG20A Bos taurus ENSBTAG00000020441 I 0.555
HMG20A Canis familiaris ENSCAFG00000018061 I 0.555
HMG20A Choloepus hoffmanni ENSCHOG00000012116 I 0.555
HMG20A Callithrix jacchus ENSCJAG00000011131 I 0.555
HMG20A Cavia porcellus ENSCPOG00000011704 I 0.555
ENSCSAG00000014734 Chlorocebus sabaeus ENSCSAG00000014734 I 0.555
HMG20A Dasypus novemcinctus ENSDNOG00000034143 I 0.555
Hmg20a Dipodomys ordii ENSDORG00000000623 I 0.555
HMG20A Erinaceus europaeus ENSEEUG00000004472 I 0.555
HMG20A Echinops telfairi ENSETEG00000015812 I 0.555
HMG20A Felis catus ENSFCAG00000022539 I 0.555
HMG20A Homo sapiens ENSG00000140382 I 0.555
HMG20A Gorilla gorilla ENSGGOG00000008439 I 0.555
HMG20A Loxodonta africana ENSLAFG00000018273 I 0.555
ENSMEUG00000016429 Macropus eugenii ENSMEUG00000016429 I 0.555
HMG20A Microcebus murinus ENSMICG00000011025 I 0.555
HMG20A Myotis lucifugus ENSMLUG00000011648 I 0.555
HMG20A Macaca mulatta ENSMMUG00000007430 I 0.555
HMG20A Monodelphis domestica ENSMODG00000012113 I 0.555
ENSMPUG00000017330 Mustela putorius furo ENSMPUG00000017330 I 0.555
Hmg20a Mus musculus ENSMUSG00000032329 I 0.555
ENSNLEG00000008357 Nomascus leucogenys ENSNLEG00000008357 I 0.555
HMG20A Ornithorhynchus anatinus ENSOANG00000009993 I 0.555
ENSOARG00000001765 Ovis aries ENSOARG00000001765 I 0.555
HMG20A Oryctolagus cuniculus ENSOCUG00000005648 I 0.555
HMG20A Otolemur garnettii ENSOGAG00000006630 I 0.555
ENSPANG00000015844 Papio anubis ENSPANG00000015844 I 0.555
HMG20A Procavia capensis ENSPCAG00000013879 I 0.555
ENSPPYG00000006683 Pongo abelii ENSPPYG00000006683 I 0.555
HMG20A Pan troglodytes ENSPTRG00000007326 I 0.555
Hmg20a Rattus norvegicus ENSRNOG00000016905 I 0.555
ENSSHAG00000012311 Sarcophilus harrisii ENSSHAG00000012311 I 0.555
HMG20A Sus scrofa ENSSSCG00000001871 I 0.555
ENSSSCG00000024002 Sus scrofa ENSSSCG00000024002 I 0.555
ENSSTOG00000013818 Ictidomys tridecemlineatus ENSSTOG00000013818 I 0.555
HMG20A Tupaia belangeri ENSTBEG00000015283 I 0.555
ENSTSYG00000003485 Tarsius syrichta ENSTSYG00000003485 I 0.555
HMG20A Tursiops truncatus ENSTTRG00000006500 I 0.555
HMG20A Vicugna pacos ENSVPAG00000010013 I 0.555
ENSP00000336856-D1 Bos grunniens ENSP00000336856-D1 I 0.555
ENSP00000371133 Macaca fascicularis ENSP00000371133 I 0.555
Myotis_brandtii_HMG20A_10005450 Myotis brandtii Myotis_brandtii_HMG20A_10005450 I 0.555
TriadG23407 Trichoplax adhaerens TriadG23407 I 0.552
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I 0.542
HMG20B Pteropus vampyrus ENSPVAG00000004300 I 0.541
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I 0.541
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I 0.541
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I 0.540
Gfo_R004366 Geospiza fortis Gfo_R004366 I 0.533
ENSMMUG00000028932 Macaca mulatta ENSMMUG00000028932 I 0.528
ENSMMUP00000031974 Macaca fascicularis ENSMMUP00000031974 I 0.528
HMG20A Sorex araneus ENSSARG00000012609 I 0.515
Ocbimv22031259m.g Octopus bimaculoides Ocbimv22031259m.g I 0.509
estExt_fgenesh2_pg.C_1350020 Branchiostoma floridae estExt_fgenesh2_pg.C_1350020 I 0.508
estExt_fgenesh2_pg.C_4800003 Branchiostoma floridae estExt_fgenesh2_pg.C_4800003 I 0.508
HMG20B Pan troglodytes ENSPTRG00000010268 I 0.486
L798_15457 Zootermopsis nevadensis L798_15457 I 0.483
LotgiG196090 Lottia gigantea LotgiG196090 I 0.467
CapteG155070 Capitella teleta CapteG155070 I 0.466
CLEC002862 Cimex lectularius CLEC002862 I 0.463
ENSMPUG00000007386 Mustela putorius furo ENSMPUG00000007386 I 0.462
NV11068 Nasonia vitripennis NV11068 I 0.461
Hsal_13222--XP_625193.1_APIME Harpegnathos saltator Hsal_13222--XP_625193.1_APIME I 0.461
SMAR002604 Strigamia maritima SMAR002604 I 0.460
Cmyd_10009674 Chelonia mydas Cmyd_10009674 I 0.457
HHAL010521-PA Halyomorpha halys HHAL010521-PA I 0.455
CapteG191691 Capitella teleta CapteG191691 I 0.449
Sakowv30005216m.g Saccoglossus kowalevskii Sakowv30005216m.g I 0.442
MCINX003064 Melitaea cinxia MCINX003064 I 0.437
YQE_10385 Dendroctonus ponderosae YQE_10385 I 0.436
GB41600 Apis mellifera GB41600 I 0.429
RPRC008043 Rhodnius prolixus RPRC008043 I 0.424
CGI_10028818 Crassostrea gigas CGI_10028818 I 0.423
HMG20A Ochotona princeps ENSOPRG00000011000 I 0.423
ACYPI002322 Acyrthosiphon pisum ACYPI002322 I 0.422
LDEC010438 Leptinotarsa decemlineata LDEC010438 I 0.421
BGIBMGA005325 Bombyx mori BGIBMGA005325 I 0.418
HMEL017569 Heliconius melpomene HMEL017569 I 0.418
LotgiG231408 Lottia gigantea LotgiG231408 I 0.415