HMG20B (Loxodonta africana)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSLAFG00000007845 T328255_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.714 0.957
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLAFP00000006588 Sox 65 133
ENSLAFP00000018289 Sox 70 138

Links

Other Sox family TFs
Other Loxodonta africana TFs

171 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.741
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.741
HMG20B Canis familiaris ENSCAFG00000019215 I 0.741
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.741
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.741
HMG20B Felis catus ENSFCAG00000026167 I 0.741
HMG20B Homo sapiens ENSG00000064961 I 0.741
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.741
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.741
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.741
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.741
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.741
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.741
HMG20B Procavia capensis ENSPCAG00000010772 I 0.741
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.741
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.741
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.741
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.741
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.737
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.737
HMG20B Gallus gallus ENSGALG00000027838 I 0.737
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.737
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.737
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.737
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.737
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.737
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.737
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.737
Aan_R011684 Calypte anna Aan_R011684 I 0.737
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.737
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.737
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.737
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.737
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.737
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.734
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.733
hmg20b.S Xenopus laevis XB-GENE-17338323 I 0.730
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.730
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.730
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.722
hmg20b Danio rerio ENSDARG00000042045 I 0.722
Hmg20b Mus musculus ENSMUSG00000020232 D 0.714
Hmg20b Rattus norvegicus ENSRNOG00000020601 I 0.714
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.653
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.653
hmg20b Oryzias latipes ENSORLG00000004640 I 0.653
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.653
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I 0.653
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.653
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.653
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I 0.649
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I 0.632
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I 0.626
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I 0.626
hmg20a Xenopus tropicalis XB-GENE-955353 I 0.626
hmg20a.L Xenopus laevis XB-GENE-955359 I 0.626
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I 0.624
hmg20a Danio rerio ENSDARG00000031198 I 0.617
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I 0.605
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I 0.598
ENSAMXG00000013048 Astyanax mexicanus ENSAMXG00000013048 I 0.595
hmg20a Gasterosteus aculeatus ENSGACG00000003466 I 0.595
ENSGMOG00000015452 Gadus morhua ENSGMOG00000015452 I 0.595
ENSONIG00000012862 Oreochromis niloticus ENSONIG00000012862 I 0.595
hmg20a Oryzias latipes ENSORLG00000001794 I 0.595
ENSPFOG00000014087 Poecilia formosa ENSPFOG00000014087 I 0.595
hmg20a Tetraodon nigroviridis ENSTNIG00000008460 I 0.595
hmg20a Takifugu rubripes ENSTRUG00000016127 I 0.595
ENSXMAG00000000587 Xiphophorus maculatus ENSXMAG00000000587 I 0.595
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I 0.595
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I 0.587
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I 0.575
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I 0.575
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I 0.566
ENSAMEG00000008348 Ailuropoda melanoleuca ENSAMEG00000008348 I 0.563
HMG20A Bos taurus ENSBTAG00000020441 I 0.563
HMG20A Canis familiaris ENSCAFG00000018061 I 0.563
HMG20A Choloepus hoffmanni ENSCHOG00000012116 I 0.563
HMG20A Callithrix jacchus ENSCJAG00000011131 I 0.563
HMG20A Cavia porcellus ENSCPOG00000011704 I 0.563
ENSCSAG00000014734 Chlorocebus sabaeus ENSCSAG00000014734 I 0.563
HMG20A Dasypus novemcinctus ENSDNOG00000034143 I 0.563
Hmg20a Dipodomys ordii ENSDORG00000000623 I 0.563
HMG20A Erinaceus europaeus ENSEEUG00000004472 I 0.563
HMG20A Echinops telfairi ENSETEG00000015812 I 0.563
HMG20A Felis catus ENSFCAG00000022539 I 0.563
HMG20A Homo sapiens ENSG00000140382 I 0.563
HMG20A Gorilla gorilla ENSGGOG00000008439 I 0.563
HMG20A Loxodonta africana ENSLAFG00000018273 I 0.563
ENSMEUG00000016429 Macropus eugenii ENSMEUG00000016429 I 0.563
HMG20A Microcebus murinus ENSMICG00000011025 I 0.563
HMG20A Myotis lucifugus ENSMLUG00000011648 I 0.563
HMG20A Macaca mulatta ENSMMUG00000007430 I 0.563
HMG20A Monodelphis domestica ENSMODG00000012113 I 0.563
ENSMPUG00000017330 Mustela putorius furo ENSMPUG00000017330 I 0.563
Hmg20a Mus musculus ENSMUSG00000032329 I 0.563
ENSNLEG00000008357 Nomascus leucogenys ENSNLEG00000008357 I 0.563
HMG20A Ornithorhynchus anatinus ENSOANG00000009993 I 0.563
ENSOARG00000001765 Ovis aries ENSOARG00000001765 I 0.563
HMG20A Oryctolagus cuniculus ENSOCUG00000005648 I 0.563
HMG20A Otolemur garnettii ENSOGAG00000006630 I 0.563
ENSPANG00000015844 Papio anubis ENSPANG00000015844 I 0.563
HMG20A Procavia capensis ENSPCAG00000013879 I 0.563
ENSPPYG00000006683 Pongo abelii ENSPPYG00000006683 I 0.563
HMG20A Pan troglodytes ENSPTRG00000007326 I 0.563
Hmg20a Rattus norvegicus ENSRNOG00000016905 I 0.563
ENSSHAG00000012311 Sarcophilus harrisii ENSSHAG00000012311 I 0.563
HMG20A Sus scrofa ENSSSCG00000001871 I 0.563
ENSSSCG00000024002 Sus scrofa ENSSSCG00000024002 I 0.563
ENSSTOG00000013818 Ictidomys tridecemlineatus ENSSTOG00000013818 I 0.563
HMG20A Tupaia belangeri ENSTBEG00000015283 I 0.563
ENSTSYG00000003485 Tarsius syrichta ENSTSYG00000003485 I 0.563
HMG20A Tursiops truncatus ENSTTRG00000006500 I 0.563
HMG20A Vicugna pacos ENSVPAG00000010013 I 0.563
ENSP00000336856-D1 Bos grunniens ENSP00000336856-D1 I 0.563
ENSP00000371133 Macaca fascicularis ENSP00000371133 I 0.563
Myotis_brandtii_HMG20A_10005450 Myotis brandtii Myotis_brandtii_HMG20A_10005450 I 0.563
HMG20B Pteropus vampyrus ENSPVAG00000004300 I 0.561
TriadG23407 Trichoplax adhaerens TriadG23407 I 0.560
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I 0.557
SMAR000790 Strigamia maritima SMAR000790 I 0.557
HMG20A Anolis carolinensis ENSACAG00000011520 I 0.555
ENSAPLG00000015603 Anas platyrhynchos ENSAPLG00000015603 I 0.555
ENSFALG00000010751 Ficedula albicollis ENSFALG00000010751 I 0.555
ENSGALG00000002746 Gallus gallus ENSGALG00000002746 I 0.555
HMG20A Meleagris gallopavo ENSMGAG00000003179 I 0.555
ENSPSIG00000013006 Pelodiscus sinensis ENSPSIG00000013006 I 0.555
HMG20A Taeniopygia guttata ENSTGUG00000003690 I 0.555
Aan_R011791 Calypte anna Aan_R011791 I 0.555
Afo_R007008 Aptenodytes forsteri Afo_R007008 I 0.555
Alligator_sinensis_CCG010545.1 Alligator sinensis Alligator_sinensis_CCG010545.1 I 0.555
Brh_R011859 Buceros rhinoceros Brh_R011859 I 0.555
Cmyd_10010094 Chelonia mydas Cmyd_10010094 I 0.555
Pvit_01997 Pogona vitticeps Pvit_01997 I 0.555
Tal_R006697 Tyto alba Tal_R006697 I 0.555
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I 0.551
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I 0.549
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I 0.549
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I 0.540
ENSMMUG00000028932 Macaca mulatta ENSMMUG00000028932 I 0.539
ENSMMUP00000031974 Macaca fascicularis ENSMMUP00000031974 I 0.539
Gfo_R004366 Geospiza fortis Gfo_R004366 I 0.524
HMG20A Sorex araneus ENSSARG00000012609 I 0.523
estExt_fgenesh2_pg.C_1350020 Branchiostoma floridae estExt_fgenesh2_pg.C_1350020 I 0.508
estExt_fgenesh2_pg.C_4800003 Branchiostoma floridae estExt_fgenesh2_pg.C_4800003 I 0.508
HMG20B Pan troglodytes ENSPTRG00000010268 I 0.505
Ocbimv22031259m.g Octopus bimaculoides Ocbimv22031259m.g I 0.493
CapteG155070 Capitella teleta CapteG155070 I 0.475
L798_15457 Zootermopsis nevadensis L798_15457 I 0.475
LotgiG196090 Lottia gigantea LotgiG196090 I 0.474
SMAR002604 Strigamia maritima SMAR002604 I 0.468
Cmyd_10009674 Chelonia mydas Cmyd_10009674 I 0.466
CLEC002862 Cimex lectularius CLEC002862 I 0.463
ENSMPUG00000007386 Mustela putorius furo ENSMPUG00000007386 I 0.462
HHAL010521-PA Halyomorpha halys HHAL010521-PA I 0.455
NV11068 Nasonia vitripennis NV11068 I 0.453
Hsal_13222--XP_625193.1_APIME Harpegnathos saltator Hsal_13222--XP_625193.1_APIME I 0.453
CapteG191691 Capitella teleta CapteG191691 I 0.449
MCINX003064 Melitaea cinxia MCINX003064 I 0.445
Sakowv30005216m.g Saccoglossus kowalevskii Sakowv30005216m.g I 0.442
YQE_10385 Dendroctonus ponderosae YQE_10385 I 0.436
BGIBMGA005325 Bombyx mori BGIBMGA005325 I 0.426
HMEL017569 Heliconius melpomene HMEL017569 I 0.426
RPRC008043 Rhodnius prolixus RPRC008043 I 0.424
CGI_10028818 Crassostrea gigas CGI_10028818 I 0.423
HMG20A Ochotona princeps ENSOPRG00000011000 I 0.423
ACYPI002322 Acyrthosiphon pisum ACYPI002322 I 0.422
GB41600 Apis mellifera GB41600 I 0.421
LDEC010438 Leptinotarsa decemlineata LDEC010438 I 0.421
LotgiG231408 Lottia gigantea LotgiG231408 I 0.415