Ocbimv22031259m.g (Octopus bimaculoides)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Ocbimv22031259m.g T334325_2.00 JGI:Metazome (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.493 0.667
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Ocbimv22031254m.p Sox 41 109
Ocbimv22031255m.p Sox 87 155
Ocbimv22031256m.p Sox 7 75
Ocbimv22031257m.p Sox 41 109
Ocbimv22031258m.p Sox 7 75
Ocbimv22031259m.p Sox 87 155
Ocbimv22031260m.p Sox 87 155
Ocbimv22031261m.p Sox 87 155

Links

Other Sox family TFs
Other Octopus bimaculoides TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
LotgiG196090 Lottia gigantea LotgiG196090 I 0.695
GB41600 Apis mellifera GB41600 I 0.587
CapteG155070 Capitella teleta CapteG155070 I 0.585
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I 0.581
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I 0.581
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I 0.574
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I 0.574
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I 0.572
hmg20a Danio rerio ENSDARG00000031198 I 0.565
ENSLACG00000004599 Latimeria chalumnae ENSLACG00000004599 I 0.563
HMG20A Anolis carolinensis ENSACAG00000011520 I 0.560
ENSAPLG00000015603 Anas platyrhynchos ENSAPLG00000015603 I 0.560
ENSFALG00000010751 Ficedula albicollis ENSFALG00000010751 I 0.560
ENSGALG00000002746 Gallus gallus ENSGALG00000002746 I 0.560
HMG20A Meleagris gallopavo ENSMGAG00000003179 I 0.560
ENSPSIG00000013006 Pelodiscus sinensis ENSPSIG00000013006 I 0.560
HMG20A Taeniopygia guttata ENSTGUG00000003690 I 0.560
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I 0.560
NV11068 Nasonia vitripennis NV11068 I 0.560
Aan_R011791 Calypte anna Aan_R011791 I 0.560
Afo_R007008 Aptenodytes forsteri Afo_R007008 I 0.560
Alligator_sinensis_CCG010545.1 Alligator sinensis Alligator_sinensis_CCG010545.1 I 0.560
Brh_R011859 Buceros rhinoceros Brh_R011859 I 0.560
Cmyd_10010094 Chelonia mydas Cmyd_10010094 I 0.560
Pvit_01997 Pogona vitticeps Pvit_01997 I 0.560
Tal_R006697 Tyto alba Tal_R006697 I 0.560
Hsal_13222--XP_625193.1_APIME Harpegnathos saltator Hsal_13222--XP_625193.1_APIME I 0.555
L798_15457 Zootermopsis nevadensis L798_15457 I 0.553
YQE_04289 Dendroctonus ponderosae YQE_04289 N 0.553
ENSAMEG00000008348 Ailuropoda melanoleuca ENSAMEG00000008348 I 0.552
HMG20A Bos taurus ENSBTAG00000020441 I 0.552
HMG20A Canis familiaris ENSCAFG00000018061 I 0.552
HMG20A Choloepus hoffmanni ENSCHOG00000012116 I 0.552
HMG20A Callithrix jacchus ENSCJAG00000011131 I 0.552
HMG20A Cavia porcellus ENSCPOG00000011704 I 0.552
ENSCSAG00000014734 Chlorocebus sabaeus ENSCSAG00000014734 I 0.552
HMG20A Dasypus novemcinctus ENSDNOG00000034143 I 0.552
Hmg20a Dipodomys ordii ENSDORG00000000623 I 0.552
HMG20A Erinaceus europaeus ENSEEUG00000004472 I 0.552
HMG20A Echinops telfairi ENSETEG00000015812 I 0.552
HMG20A Felis catus ENSFCAG00000022539 I 0.552
HMG20A Homo sapiens ENSG00000140382 I 0.552
HMG20A Gorilla gorilla ENSGGOG00000008439 I 0.552
HMG20A Loxodonta africana ENSLAFG00000018273 I 0.552
ENSMEUG00000016429 Macropus eugenii ENSMEUG00000016429 I 0.552
HMG20A Microcebus murinus ENSMICG00000011025 I 0.552
HMG20A Myotis lucifugus ENSMLUG00000011648 I 0.552
HMG20A Macaca mulatta ENSMMUG00000007430 I 0.552
HMG20A Monodelphis domestica ENSMODG00000012113 I 0.552
ENSMPUG00000017330 Mustela putorius furo ENSMPUG00000017330 I 0.552
Hmg20a Mus musculus ENSMUSG00000032329 I 0.552
ENSNLEG00000008357 Nomascus leucogenys ENSNLEG00000008357 I 0.552
HMG20A Ornithorhynchus anatinus ENSOANG00000009993 I 0.552
ENSOARG00000001765 Ovis aries ENSOARG00000001765 I 0.552
HMG20A Oryctolagus cuniculus ENSOCUG00000005648 I 0.552
HMG20A Otolemur garnettii ENSOGAG00000006630 I 0.552
ENSPANG00000015844 Papio anubis ENSPANG00000015844 I 0.552
HMG20A Procavia capensis ENSPCAG00000013879 I 0.552
ENSPPYG00000006683 Pongo abelii ENSPPYG00000006683 I 0.552
HMG20A Pan troglodytes ENSPTRG00000007326 I 0.552
Hmg20a Rattus norvegicus ENSRNOG00000016905 I 0.552
ENSSHAG00000012311 Sarcophilus harrisii ENSSHAG00000012311 I 0.552
HMG20A Sus scrofa ENSSSCG00000001871 I 0.552
ENSSSCG00000024002 Sus scrofa ENSSSCG00000024002 I 0.552
ENSSTOG00000013818 Ictidomys tridecemlineatus ENSSTOG00000013818 I 0.552
HMG20A Tupaia belangeri ENSTBEG00000015283 I 0.552
ENSTSYG00000003485 Tarsius syrichta ENSTSYG00000003485 I 0.552
HMG20A Tursiops truncatus ENSTTRG00000006500 I 0.552
HMG20A Vicugna pacos ENSVPAG00000010013 I 0.552
ENSP00000336856-D1 Bos grunniens ENSP00000336856-D1 I 0.552
ENSP00000371133 Macaca fascicularis ENSP00000371133 I 0.552
Myotis_brandtii_HMG20A_10005450 Myotis brandtii Myotis_brandtii_HMG20A_10005450 I 0.552
HHAL010521-PA Halyomorpha halys HHAL010521-PA I 0.545
ENSAMXG00000013048 Astyanax mexicanus ENSAMXG00000013048 I 0.543
hmg20a Gasterosteus aculeatus ENSGACG00000003466 I 0.543
ENSONIG00000012862 Oreochromis niloticus ENSONIG00000012862 I 0.543
hmg20a Oryzias latipes ENSORLG00000001794 I 0.543
ENSPFOG00000014087 Poecilia formosa ENSPFOG00000014087 I 0.543
hmg20a Tetraodon nigroviridis ENSTNIG00000008460 I 0.543
hmg20a Takifugu rubripes ENSTRUG00000016127 I 0.543
ENSXMAG00000000587 Xiphophorus maculatus ENSXMAG00000000587 I 0.543
CLEC002862 Cimex lectularius CLEC002862 I 0.542
ENSGMOG00000015452 Gadus morhua ENSGMOG00000015452 I 0.538
MCINX003064 Melitaea cinxia MCINX003064 I 0.534
TriadG23407 Trichoplax adhaerens TriadG23407 I 0.533
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I 0.533
hmg20a Xenopus tropicalis XB-GENE-955353 I 0.530
hmg20a.L Xenopus laevis XB-GENE-955359 I 0.530
Gfo_R004366 Geospiza fortis Gfo_R004366 I 0.529
HMEL017569 Heliconius melpomene HMEL017569 I 0.520
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I 0.517
BGIBMGA005325 Bombyx mori BGIBMGA005325 I 0.516
HMG20A Sorex araneus ENSSARG00000012609 I 0.511
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.509
hmg20b Danio rerio ENSDARG00000042045 I 0.509
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I 0.504
RPRC008043 Rhodnius prolixus RPRC008043 I 0.504
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.502
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.498
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.498
hmg20b Oryzias latipes ENSORLG00000004640 I 0.498
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.498
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.498
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.493
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.493
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.493
HMG20B Canis familiaris ENSCAFG00000019215 I 0.493
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.493
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.493
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.493
HMG20B Felis catus ENSFCAG00000026167 I 0.493
HMG20B Homo sapiens ENSG00000064961 I 0.493
HMG20B Gallus gallus ENSGALG00000027838 I 0.493
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.493
HMG20B Loxodonta africana ENSLAFG00000007845 I 0.493
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.493
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.493
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.493
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.493
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.493
Hmg20b Mus musculus ENSMUSG00000020232 D 0.493
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.493
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.493
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.493
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.493
HMG20B Procavia capensis ENSPCAG00000010772 I 0.493
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.493
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.493
Hmg20b Rattus norvegicus ENSRNOG00000020601 I 0.493
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.493
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.493
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.493
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.493
SMAR002604 Strigamia maritima SMAR002604 I 0.493
Aan_R011684 Calypte anna Aan_R011684 I 0.493
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.493
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.493
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.493
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.493
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.493
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.493
hmg20b.S Xenopus laevis XB-GENE-17338323 I 0.493
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.493
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.493
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I 0.491
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.491
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I 0.488
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I 0.488
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.486
ACEP22292 Atta cephalotes ACEP22292 N 0.485
DAPPUDRAFT_189566 Daphnia pulex DAPPUDRAFT_189566 N 0.484
ENSCING00000018888 Ciona intestinalis ENSCING00000018888 N 0.483
Cflo_07151--XP_625193.1_APIME Camponotus floridanus Cflo_07151--XP_625193.1_APIME N 0.483
SINV20852 Solenopsis invicta SINV20852 N 0.478
LDEC005234 Leptinotarsa decemlineata LDEC005234 N 0.475
BGLB005856 Biomphalaria glabrata BGLB005856 N 0.475
BGLB012439 Biomphalaria glabrata BGLB012439 N 0.475
KGM_20768 Danaus plexippus KGM_20768 N 0.474
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I 0.472
TC009230 Tribolium castaneum TC009230 N 0.472
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I 0.467
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I 0.462
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I 0.460
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I 0.460
ENSCSAVG00000001086 Ciona savignyi ENSCSAVG00000001086 N 0.455
CpipJ_CPIJ004396 Culex pipiens CpipJ_CPIJ004396 N 0.452
CPIJ004396 Culex quinquefasciatus CPIJ004396 N 0.452
CGI_10011619 Crassostrea gigas CGI_10011619 N 0.440
SMAR000790 Strigamia maritima SMAR000790 I 0.431
PHUM514030 Pediculus humanus PHUM514030 N 0.428
CGI_10028818 Crassostrea gigas CGI_10028818 I 0.424
Sakowv30005216m.g Saccoglossus kowalevskii Sakowv30005216m.g I 0.419