ENSLACG00000004599 (Latimeria chalumnae)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00505 (HMG_box) IPR000910 ENSLACG00000004599 T328223_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Hmg20b
M02487_2.00 		Mus musculus
NNATTATWHWN
NWDWATAATNN		 PBM
Weirauch et al.(2014)
pTH8555 		0.632 0.768
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSLACP00000005178 Sox 104 172
ENSLACP00000021993 Sox 104 172

Links

Other Sox family TFs
Other Latimeria chalumnae TFs

177 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSLOCG00000014255 Lepisosteus oculatus ENSLOCG00000014255 I 0.733
hmg20a Danio rerio ENSDARG00000031198 I 0.726
hmg20a Xenopus tropicalis XB-GENE-955353 I 0.708
hmg20a.L Xenopus laevis XB-GENE-955359 I 0.708
ENSAMXG00000013048 Astyanax mexicanus ENSAMXG00000013048 I 0.704
hmg20a Gasterosteus aculeatus ENSGACG00000003466 I 0.704
ENSONIG00000012862 Oreochromis niloticus ENSONIG00000012862 I 0.704
hmg20a Oryzias latipes ENSORLG00000001794 I 0.704
ENSPFOG00000014087 Poecilia formosa ENSPFOG00000014087 I 0.704
hmg20a Tetraodon nigroviridis ENSTNIG00000008460 I 0.704
hmg20a Takifugu rubripes ENSTRUG00000016127 I 0.704
ENSXMAG00000000587 Xiphophorus maculatus ENSXMAG00000000587 I 0.704
ENSGMOG00000015452 Gadus morhua ENSGMOG00000015452 I 0.700
estExt_fgenesh2_pg.C_2300011 Branchiostoma floridae estExt_fgenesh2_pg.C_2300011 I 0.681
estExt_fgenesh2_pg.C_2300014 Branchiostoma floridae estExt_fgenesh2_pg.C_2300014 I 0.681
ENSAMEG00000008348 Ailuropoda melanoleuca ENSAMEG00000008348 I 0.668
HMG20A Bos taurus ENSBTAG00000020441 I 0.668
HMG20A Canis familiaris ENSCAFG00000018061 I 0.668
HMG20A Choloepus hoffmanni ENSCHOG00000012116 I 0.668
HMG20A Callithrix jacchus ENSCJAG00000011131 I 0.668
HMG20A Cavia porcellus ENSCPOG00000011704 I 0.668
ENSCSAG00000014734 Chlorocebus sabaeus ENSCSAG00000014734 I 0.668
HMG20A Dasypus novemcinctus ENSDNOG00000034143 I 0.668
Hmg20a Dipodomys ordii ENSDORG00000000623 I 0.668
HMG20A Erinaceus europaeus ENSEEUG00000004472 I 0.668
HMG20A Echinops telfairi ENSETEG00000015812 I 0.668
HMG20A Felis catus ENSFCAG00000022539 I 0.668
HMG20A Homo sapiens ENSG00000140382 I 0.668
HMG20A Gorilla gorilla ENSGGOG00000008439 I 0.668
HMG20A Loxodonta africana ENSLAFG00000018273 I 0.668
ENSMEUG00000016429 Macropus eugenii ENSMEUG00000016429 I 0.668
HMG20A Microcebus murinus ENSMICG00000011025 I 0.668
HMG20A Myotis lucifugus ENSMLUG00000011648 I 0.668
HMG20A Macaca mulatta ENSMMUG00000007430 I 0.668
HMG20A Monodelphis domestica ENSMODG00000012113 I 0.668
ENSMPUG00000017330 Mustela putorius furo ENSMPUG00000017330 I 0.668
Hmg20a Mus musculus ENSMUSG00000032329 I 0.668
ENSNLEG00000008357 Nomascus leucogenys ENSNLEG00000008357 I 0.668
HMG20A Ornithorhynchus anatinus ENSOANG00000009993 I 0.668
ENSOARG00000001765 Ovis aries ENSOARG00000001765 I 0.668
HMG20A Oryctolagus cuniculus ENSOCUG00000005648 I 0.668
HMG20A Otolemur garnettii ENSOGAG00000006630 I 0.668
ENSPANG00000015844 Papio anubis ENSPANG00000015844 I 0.668
HMG20A Procavia capensis ENSPCAG00000013879 I 0.668
ENSPPYG00000006683 Pongo abelii ENSPPYG00000006683 I 0.668
HMG20A Pan troglodytes ENSPTRG00000007326 I 0.668
Hmg20a Rattus norvegicus ENSRNOG00000016905 I 0.668
ENSSHAG00000012311 Sarcophilus harrisii ENSSHAG00000012311 I 0.668
HMG20A Sus scrofa ENSSSCG00000001871 I 0.668
ENSSSCG00000024002 Sus scrofa ENSSSCG00000024002 I 0.668
ENSSTOG00000013818 Ictidomys tridecemlineatus ENSSTOG00000013818 I 0.668
HMG20A Tupaia belangeri ENSTBEG00000015283 I 0.668
ENSTSYG00000003485 Tarsius syrichta ENSTSYG00000003485 I 0.668
HMG20A Tursiops truncatus ENSTTRG00000006500 I 0.668
HMG20A Vicugna pacos ENSVPAG00000010013 I 0.668
ENSP00000336856-D1 Bos grunniens ENSP00000336856-D1 I 0.668
ENSP00000371133 Macaca fascicularis ENSP00000371133 I 0.668
Myotis_brandtii_HMG20A_10005450 Myotis brandtii Myotis_brandtii_HMG20A_10005450 I 0.668
NEMVEDRAFT_v1g105457 Nematostella vectensis NEMVEDRAFT_v1g105457 I 0.663
HMG20A Anolis carolinensis ENSACAG00000011520 I 0.659
ENSAPLG00000015603 Anas platyrhynchos ENSAPLG00000015603 I 0.659
ENSFALG00000010751 Ficedula albicollis ENSFALG00000010751 I 0.659
ENSGALG00000002746 Gallus gallus ENSGALG00000002746 I 0.659
HMG20A Meleagris gallopavo ENSMGAG00000003179 I 0.659
HMG20A Taeniopygia guttata ENSTGUG00000003690 I 0.659
Aan_R011791 Calypte anna Aan_R011791 I 0.659
Afo_R007008 Aptenodytes forsteri Afo_R007008 I 0.659
Alligator_sinensis_CCG010545.1 Alligator sinensis Alligator_sinensis_CCG010545.1 I 0.659
Brh_R011859 Buceros rhinoceros Brh_R011859 I 0.659
Pvit_01997 Pogona vitticeps Pvit_01997 I 0.659
Tal_R006697 Tyto alba Tal_R006697 I 0.659
hmg20b.S Xenopus laevis XB-GENE-17338323 I 0.639
hmg20b Xenopus tropicalis XB-GENE-5809048 I 0.639
hmg20b.L Xenopus laevis XB-GENE-5809135 I 0.639
ENSAMEG00000005678 Ailuropoda melanoleuca ENSAMEG00000005678 I 0.632
ENSAPLG00000005528 Anas platyrhynchos ENSAPLG00000005528 I 0.632
ENSBTAG00000047668 Bos taurus ENSBTAG00000047668 I 0.632
HMG20B Canis familiaris ENSCAFG00000019215 I 0.632
HMG20B Cavia porcellus ENSCPOG00000010777 I 0.632
ENSCSAG00000011140 Chlorocebus sabaeus ENSCSAG00000011140 I 0.632
ENSFALG00000011609 Ficedula albicollis ENSFALG00000011609 I 0.632
HMG20B Felis catus ENSFCAG00000026167 I 0.632
HMG20B Homo sapiens ENSG00000064961 I 0.632
HMG20B Gallus gallus ENSGALG00000027838 I 0.632
HMG20B Gorilla gorilla ENSGGOG00000014805 I 0.632
HMG20B Loxodonta africana ENSLAFG00000007845 I 0.632
ENSMEUG00000001270 Macropus eugenii ENSMEUG00000001270 I 0.632
HMG20B Meleagris gallopavo ENSMGAG00000001362 I 0.632
HMG20B Myotis lucifugus ENSMLUG00000022392 I 0.632
HMG20B Monodelphis domestica ENSMODG00000006884 I 0.632
ENSMPUG00000003925 Mustela putorius furo ENSMPUG00000003925 I 0.632
Hmg20b Mus musculus ENSMUSG00000020232 D 0.632
HMG20B Ornithorhynchus anatinus ENSOANG00000013515 I 0.632
ENSOARG00000012318 Ovis aries ENSOARG00000012318 I 0.632
HMG20B Otolemur garnettii ENSOGAG00000014171 I 0.632
ENSPANG00000010575 Papio anubis ENSPANG00000010575 I 0.632
HMG20B Procavia capensis ENSPCAG00000010772 I 0.632
ENSPPYG00000009378 Pongo abelii ENSPPYG00000009378 I 0.632
ENSPSIG00000010923 Pelodiscus sinensis ENSPSIG00000010923 I 0.632
Hmg20b Rattus norvegicus ENSRNOG00000020601 I 0.632
ENSSHAG00000007226 Sarcophilus harrisii ENSSHAG00000007226 I 0.632
ENSSTOG00000022314 Ictidomys tridecemlineatus ENSSTOG00000022314 I 0.632
HMG20B Taeniopygia guttata ENSTGUG00000000169 I 0.632
HMG20B Tursiops truncatus ENSTTRG00000008832 I 0.632
Aan_R011684 Calypte anna Aan_R011684 I 0.632
Afo_R007636 Aptenodytes forsteri Afo_R007636 I 0.632
Alligator_sinensis_CCG000441.1 Alligator sinensis Alligator_sinensis_CCG000441.1 I 0.632
Cmyd_10002377 Chelonia mydas Cmyd_10002377 I 0.632
Gfo_R007604 Geospiza fortis Gfo_R007604 I 0.632
Myotis_brandtii_HMG20B_10016321 Myotis brandtii Myotis_brandtii_HMG20B_10016321 I 0.632
Pvit_08123 Pogona vitticeps Pvit_08123 I 0.632
Gfo_R004366 Geospiza fortis Gfo_R004366 I 0.628
ENSPSIG00000013006 Pelodiscus sinensis ENSPSIG00000013006 I 0.627
HMG20A Sorex araneus ENSSARG00000012609 I 0.627
Cmyd_10010094 Chelonia mydas Cmyd_10010094 I 0.627
TriadG23407 Trichoplax adhaerens TriadG23407 I 0.626
ENSDORG00000012598 Dipodomys ordii ENSDORG00000012598 I 0.625
ENSAMXG00000017986 Astyanax mexicanus ENSAMXG00000017986 I 0.624
HMG20B Callithrix jacchus ENSCJAG00000003488 I 0.624
hmg20b Danio rerio ENSDARG00000042045 I 0.624
hmg20b Gasterosteus aculeatus ENSGACG00000012785 I 0.622
ENSGMOG00000011717 Gadus morhua ENSGMOG00000011717 I 0.622
ENSONIG00000004838 Oreochromis niloticus ENSONIG00000004838 I 0.622
hmg20b Oryzias latipes ENSORLG00000004640 I 0.622
ENSPFOG00000003017 Poecilia formosa ENSPFOG00000003017 I 0.622
hmg20b Tetraodon nigroviridis ENSTNIG00000010630 I 0.622
eef2l2 Takifugu rubripes ENSTRUG00000017921 I 0.622
ENSXMAG00000012647 Xiphophorus maculatus ENSXMAG00000012647 I 0.622
NEMVEDRAFT_v1g87244 Nematostella vectensis NEMVEDRAFT_v1g87244 I 0.622
ENSOARG00000005838 Ovis aries ENSOARG00000005838 I 0.617
Sakowv30033800m.g Saccoglossus kowalevskii Sakowv30033800m.g I 0.605
SPU_004776 Strongylocentrotus purpuratus SPU_004776 I 0.602
SPU_018371 Strongylocentrotus purpuratus SPU_018371 I 0.602
ENSAMEG00000010946 Ailuropoda melanoleuca ENSAMEG00000010946 I 0.588
ENSLACG00000010699 Latimeria chalumnae ENSLACG00000010699 I 0.583
ENSCPOG00000020879 Cavia porcellus ENSCPOG00000020879 I 0.574
ENSLOCG00000010117 Lepisosteus oculatus ENSLOCG00000010117 I 0.571
Ocbimv22031259m.g Octopus bimaculoides Ocbimv22031259m.g I 0.563
SMAR000790 Strigamia maritima SMAR000790 I 0.558
XP_002158984.1 Hydra magnipapillata XP_002158984.1 I 0.554
XP_002161760.1 Hydra magnipapillata XP_002161760.1 I 0.554
LotgiG196090 Lottia gigantea LotgiG196090 I 0.537
CapteG155070 Capitella teleta CapteG155070 I 0.530
SMAR002604 Strigamia maritima SMAR002604 I 0.527
estExt_fgenesh2_pg.C_1350020 Branchiostoma floridae estExt_fgenesh2_pg.C_1350020 I 0.518
estExt_fgenesh2_pg.C_4800003 Branchiostoma floridae estExt_fgenesh2_pg.C_4800003 I 0.518
L798_15457 Zootermopsis nevadensis L798_15457 I 0.513
HHAL010521-PA Halyomorpha halys HHAL010521-PA I 0.494
NV11068 Nasonia vitripennis NV11068 I 0.491
CLEC002862 Cimex lectularius CLEC002862 I 0.491
MCINX003064 Melitaea cinxia MCINX003064 I 0.490
ENSMMUG00000028932 Macaca mulatta ENSMMUG00000028932 I 0.485
ENSMMUP00000031974 Macaca fascicularis ENSMMUP00000031974 I 0.485
HMEL017569 Heliconius melpomene HMEL017569 I 0.476
Sakowv30005216m.g Saccoglossus kowalevskii Sakowv30005216m.g I 0.474
HMG20A Ochotona princeps ENSOPRG00000011000 I 0.472
BGIBMGA005325 Bombyx mori BGIBMGA005325 I 0.471
CapteG191691 Capitella teleta CapteG191691 I 0.465
Cmyd_10009674 Chelonia mydas Cmyd_10009674 I 0.461
GB41600 Apis mellifera GB41600 I 0.459
Hsal_13222--XP_625193.1_APIME Harpegnathos saltator Hsal_13222--XP_625193.1_APIME I 0.459
RPRC008043 Rhodnius prolixus RPRC008043 I 0.456
HMG20B Pteropus vampyrus ENSPVAG00000004300 I 0.452
LDEC010438 Leptinotarsa decemlineata LDEC010438 I 0.448
YQE_04289 Dendroctonus ponderosae YQE_04289 N 0.442
ENSMPUG00000007386 Mustela putorius furo ENSMPUG00000007386 I 0.441
CGI_10028818 Crassostrea gigas CGI_10028818 I 0.440
LotgiG231408 Lottia gigantea LotgiG231408 I 0.431
KGM_20768 Danaus plexippus KGM_20768 N 0.430
HelroG189739 Helobdella robusta HelroG189739 N 0.428
ENSCING00000018888 Ciona intestinalis ENSCING00000018888 N 0.427
ACYPI002322 Acyrthosiphon pisum ACYPI002322 I 0.426
TC011144 Tribolium castaneum TC011144 N 0.419
DAPPUDRAFT_189566 Daphnia pulex DAPPUDRAFT_189566 N 0.416
ENSCSAVG00000001086 Ciona savignyi ENSCSAVG00000001086 N 0.416
PHUM514030 Pediculus humanus PHUM514030 N 0.416