Lus10032379.g (Linum usitatissimum)
Sox

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00505 (HMG_box) IPR000910 Lus10032379.g T334580_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
HMGB13
M07268_2.00 		Arabidopsis thaliana
HNHYNBNNNHDYCDCCGCCRB
VYGGCGGHGRHDNNNVNRDND		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_col_a 		0.503 0.657
HMGB13
M07269_2.00 		Arabidopsis thaliana
GGHGGHGGYGGHGGN
NCCDCCRCCDCCDCC		 Dap-seq
OMalley et al.(2016)
3XHMGBOX1_colamp_a 		0.503 0.657
For this family, TFs with SR scores > 0.415 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Lus10032379 Sox 172 240
Lus10032379 Sox 289 361
Lus10032379 Sox 424 493

Links

Other Sox family TFs
Other Linum usitatissimum TFs

49 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
ENSAMEG00000000812 Ailuropoda melanoleuca ENSAMEG00000000812 I
Alligator_sinensis_CCG010229.1 Alligator sinensis Alligator_sinensis_CCG010229.1 I
ENSAPLG00000015868 Anas platyrhynchos ENSAPLG00000015868 I
BCL6 Anolis carolinensis ENSACAG00000006666 I
Afo_R010236 Aptenodytes forsteri Afo_R010236 I
ENSBTAP00000001978-D1 Bos grunniens ENSBTAP00000001978-D1 I
BCL6 Bos taurus ENSBTAG00000001511 I
Brh_R006050 Buceros rhinoceros Brh_R006050 I
BCL6 Callithrix jacchus ENSCJAG00000014375 I
Aan_R013387 Calypte anna Aan_R013387 I
BCL6 Canis familiaris ENSCAFG00000013904 I
BCL6 Cavia porcellus ENSCPOG00000004090 I
Cmyd_10010560 Chelonia mydas Cmyd_10010560 I
ENSCSAG00000009138 Chlorocebus sabaeus ENSCSAG00000009138 I
BCL6 Dasypus novemcinctus ENSDNOG00000004306 I
Bcl6 Dipodomys ordii ENSDORG00000005608 I
BCL6 Echinops telfairi ENSETEG00000014830 I
BCL6 Equus caballus ENSECAG00000004556 I
BCL6 Erinaceus europaeus ENSEEUG00000000344 I
BCL6 Felis catus ENSFCAG00000006810 I
ENSFALG00000007407 Ficedula albicollis ENSFALG00000007407 I
BCL6 Gallus gallus ENSGALG00000007357 I
Gfo_R004424 Geospiza fortis Gfo_R004424 I
BCL6 Gorilla gorilla ENSGGOG00000026549 I
BCL6 Homo sapiens ENSG00000113916 D
BCL6 Loxodonta africana ENSLAFG00000012300 I
ENSP00000384371 Macaca fascicularis ENSP00000384371 I
BCL6 Macaca mulatta ENSMMUG00000009198 I
ENSMEUG00000004411 Macropus eugenii ENSMEUG00000004411 I
BCL6 Meleagris gallopavo ENSMGAG00000007602 I
BCL6 Microcebus murinus ENSMICG00000001780 I
ENSMPUG00000003415 Mustela putorius furo ENSMPUG00000003415 I
Bcl6 Mus musculus ENSMUSG00000022508 D
Myotis_brandtii_BCL6_10016106 Myotis brandtii Myotis_brandtii_BCL6_10016106 I
BCL6 Myotis lucifugus ENSMLUG00000012905 I
ENSNLEG00000006705 Nomascus leucogenys ENSNLEG00000006705 I
BCL6 Ochotona princeps ENSOPRG00000005797 I
BCL6 Ornithorhynchus anatinus ENSOANG00000000872 I
BCL6 Oryctolagus cuniculus ENSOCUG00000005429 I
BCL6 Otolemur garnettii ENSOGAG00000007638 I
BCL6 Pan troglodytes ENSPTRG00000015728 I
ENSPANG00000017677 Papio anubis ENSPANG00000017677 I
ENSPSIG00000014529 Pelodiscus sinensis ENSPSIG00000014529 I
Pvit_01837 Pogona vitticeps Pvit_01837 I
ENSPPYG00000014395 Pongo abelii ENSPPYG00000014395 I
Bcl6 Rattus norvegicus ENSRNOG00000001843 I
ENSSHAG00000013935 Sarcophilus harrisii ENSSHAG00000013935 I
BCL6 Sus scrofa ENSSSCG00000011810 I
BCL6 Tursiops truncatus ENSTTRG00000017230 I
Tal_R005794 Tyto alba Tal_R005794 I
bcl6.S Xenopus laevis XB-GENE-17336238 I
bcl6.L Xenopus laevis XB-GENE-984483 I
bcl6 Xenopus tropicalis XB-GENE-984479 I