CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

Pavir.Ib04136 *(Panicum virgatum)* Sox
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source
PF00505 (HMG_box)	IPR000910	Pavir.Ib04136	T334679_2.00	JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
YAB1 M00890_2.00	Arabidopsis thaliana	AATAATWA	TWATTATT	PBM Franco-Zorrilla et al.(2014) YAB1	0.731	0.886
YAB5 M02486_2.00	Arabidopsis thaliana	NNNNHRN	NYDNNNN	PBM Weirauch et al.(2014) pTH7575	0.701	0.886
YAB5 M00889_2.00	Arabidopsis thaliana	NATRATTADNNN	NNNHTAATYATN	PBM Franco-Zorrilla et al.(2014) YAB5	0.701	0.886
CRC M07266_2.00	Arabidopsis thaliana	TWATCATW	WATGATWA	Dap-seq OMalley et al.(2016) CRC_col_a	0.654	0.659
CRC M07267_2.00	Arabidopsis thaliana	GGTTAGTGTTTTGGAGTCGAATATGACTTG	CAAGTCATATTCGACTCCAAAACACTAACC	Dap-seq OMalley et al.(2016) CRC_colamp_a	0.654	0.659
INO M02485_2.00	Arabidopsis thaliana	NHNNNYRNNN	NNNYRNNNDN	PBM Weirauch et al.(2014) pTH7516	0.602	0.773
For this family, TFs with SR scores > 0.415* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
Pavir.Ib04136.1.p	Sox	121	164	RQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPN
Pavir.Ib04136.2.p	Sox	121	164	RQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPN
Pavir.Ib04136.3.p	Sox	121	164	RQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPN
Pavir.Ib04136.4.p	Sox	80	123	RQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPN
Pavir.Ib04136.5.p	Sox	118	161	RQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPN
Pavir.Ib04136.6.p	Sox	77	120	RQRVPSAYNRFIKEEIRRIKASNPAISHREAFSTAAKNWAHFPN

Links
Other Sox family TFs
Other *Panicum virgatum* TFs