GLYMA16G25450 (Glycine max)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00352 (TBP) IPR000814 GLYMA16G25450 T342574_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
SPT15
M01567_2.00 		Saccharomyces cerevisiae
NNDWDAW
WTHWHNN		 PBM
Zhu et al.(2009)
Spt15 		0.835 0.835
SPT15
M08609_2.00 		Saccharomyces cerevisiae
NNBBHWTATATATWNCNNDNB
VNHNNGNWATATATAWDVVNN		 Misc
DeBoer et al.(2011)
YER148W_798 		0.835 0.835
SPT15
M11393_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$TBP_Q6 		0.868 0.868
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.844 0.844
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.810 0.810
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.810 0.810
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.810 0.810
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.810 0.810
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.810 0.810
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.810 0.810
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.810 0.810
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.810 0.810
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.810 0.810
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA16G25450.2 TBP 22 104
GLYMA16G25450.2 TBP 112 186
GLYMA16G25450.5 TBP 98 180
GLYMA16G25450.5 TBP 188 271
GLYMA16G25450.6 TBP 22 104
GLYMA16G25450.6 TBP 112 195
GLYMA16G25450.7 TBP 22 104
GLYMA16G25450.7 TBP 112 195

Links

Other TBP family TFs
Other Glycine max TFs

767 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Aquca_045_00169 Aquilegia coerulea Aquca_045_00169 I
Aquca_083_00054 Aquilegia coerulea Aquca_083_00054 I
BRADI2G28910 Brachypodium distachyon BRADI2G28910 N
Bo3g153550 Brassica oleracea Bo3g153550 I
Eucgr.H02226 Eucalyptus grandis Eucgr.H02226 I
GLYMA05G21220 Glycine max GLYMA05G21220 I
Gorai.007G218100 Gossypium raimondii Gorai.007G218100 I
Gorai.002G009300 Gossypium raimondii Gorai.002G009300 I
MLOC_26177 Hordeum vulgare MLOC_26177 N
LPERR05G10150 Leersia perrieri LPERR05G10150 I
Lus10014103.g Linum usitatissimum Lus10014103.g I
Lus10010238.g Linum usitatissimum Lus10010238.g I
CM0528.210.nd Lotus japonicus CM0528.210.nd I
MTR_4g094982 Medicago truncatula MTR_4g094982 I
mgf014089m Mimulus guttatus mgf014089m I
mgf023922m Mimulus guttatus mgf023922m I
GSMUA_Achr4G20150_001 Musa acuminata GSMUA_Achr4G20150_001 I
GSMUA_Achr4G09450_001 Musa acuminata GSMUA_Achr4G09450_001 I
GSMUA_Achr1G26140_001 Musa acuminata GSMUA_Achr1G26140_001 I
ORGLA05G0109400 Oryza glaberrima ORGLA05G0109400 I
OGLUM05G13590 Oryza glumaepatula OGLUM05G13590 I
BGIOSGA018239 Oryza indica BGIOSGA018239 I
BGIOSGA018238 Oryza indica BGIOSGA018238 I
OMERI05G11510 Oryza meridionalis OMERI05G11510 I
ONIVA05G13470 Oryza nivara ONIVA05G13470 I
OPUNC05G11020 Oryza punctata OPUNC05G11020 I
ORUFI05G13850 Oryza rufipogon ORUFI05G13850 I
Pavir.J33236 Panicum virgatum Pavir.J33236 I
POPTR_0005s18620 Populus trichocarpa POPTR_0005s18620 I
SapurV1A.0708s0130 Salix purpurea SapurV1A.0708s0130 I
Si024344m.g Setaria italica Si024344m.g I
Solyc02g092930.1 Solanum lycopersicum Solyc02g092930.1 I
Solyc04g078420.1 Solanum lycopersicum Solyc04g078420.1 I
PGSC0003DMG400024983 Solanum tuberosum PGSC0003DMG400024983 I
PGSC0003DMG400003316 Solanum tuberosum PGSC0003DMG400003316 I
Sb09g016570 Sorghum bicolor Sb09g016570 I
TCM_007138 Theobroma cacao TCM_007138 I