GPLIN_001374400 (Globodera pallida)
TBP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00352 (TBP) IPR000814 GPLIN_001374400 T343479_2.00 WormBase:ParaSite (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tbp
M00216_2.00 		Mus musculus
NWWWWAW
WTWWWWN		 PBM
Badis et al.(2009)
Tbp_pr781 		0.774 0.774
TBP
M08231_2.00 		Homo sapiens
YATTTGCATD
HATGCAAATR		 ChIP-seq
Contrino et al.(2012)
Mv129 		0.774 0.774
TBP
M09432_2.00 		Homo sapiens
MTATAWAWRS
SYWTWTATAK		 Misc
Kulakovskiy et al.(2013)
TBP_HUMAN.H11MO.0.A 		0.774 0.774
Tbp
M09433_2.00 		Mus musculus
VTATAAAARS
SYTTTTATAB		 Misc
Kulakovskiy et al.(2013)
TBP_MOUSE.H11MO.0.A 		0.774 0.774
TBP
M11388_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Transfac
Matys et al.(2006)
V$TATA_01 		0.774 0.774
TBP
M11389_2.00 		Homo sapiens
NCYWTAAAAD
HTTTTAWRGN		 Transfac
Matys et al.(2006)
V$TATA_C 		0.774 0.774
TBP
M11390_2.00 		Homo sapiens
KATAAATW
WATTTATM		 Transfac
Matys et al.(2006)
V$TBP_01 		0.774 0.774
TBP
M11391_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6_01 		0.774 0.774
TBP
M11392_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TBP_Q6 		0.774 0.774
TBP
M11491_2.00 		Homo sapiens
VTATAWAWRVVNNNN
NNNNBBYWTWTATAB		 Unknown
Mathelier et al.(2014)
MA0108.2 		0.774 0.774
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GPLIN_001374400 TBP 180 219
GPLIN_001374400 TBP 246 329

Links

Other TBP family TFs
Other Globodera pallida TFs

63 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AMTR_s00061p00028660 Amborella trichopoda AMTR_s00061p00028660 N
PK14046.1 Cannabis sativa PK14046.1 N
evm.TU.supercontig_29.102 Carica papaya evm.TU.supercontig_29.102 N
gene32271-v1.0-hybrid Fragaria vesca gene32271-v1.0-hybrid N
GLYMA01G42065 Glycine max GLYMA01G42065 N
MDP0000230416 Malus domestica MDP0000230416 N
GSMUA_Achr8G28860_001 Musa acuminata GSMUA_Achr8G28860_001 N
PDK_20s1631911g001 Phoenix dactylifera PDK_20s1631911g001 N
Pm023575 Prunus mume Pm023575 N
Solyc08g007470.1 Solanum lycopersicum Solyc08g007470.1 N
PGSC0003DMG401012482 Solanum tuberosum PGSC0003DMG401012482 N
TCM_016057 Theobroma cacao TCM_016057 N