CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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MDP0000230416
(
Malus domestica
)
BED ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF02892 (zf-BED)
IPR003656
MDP0000230416
T028389_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
MDP0000230416
BED ZF
6
48
DACWEHCVLVDATKQKVRCNYCQREFSGGVYRMKFHLAQIKNK
Links
Other
BED ZF
family TFs
Other
Malus domestica
TFs
12 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gene32271-v1.0-hybrid
Fragaria vesca
gene32271-v1.0-hybrid
N
0.975
AMTR_s00061p00028660
Amborella trichopoda
AMTR_s00061p00028660
N
0.974
GLYMA01G42065
Glycine max
GLYMA01G42065
N
0.974
Solyc08g007470.1
Solanum lycopersicum
Solyc08g007470.1
N
0.950
Pm023575
Prunus mume
Pm023575
N
0.950
PDK_20s1631911g001
Phoenix dactylifera
PDK_20s1631911g001
N
0.949
TCM_016057
Theobroma cacao
TCM_016057
N
0.949
GSMUA_Achr8G28860_001
Musa acuminata
GSMUA_Achr8G28860_001
N
0.949
PGSC0003DMG401012482
Solanum tuberosum
PGSC0003DMG401012482
N
0.925
evm.TU.supercontig_29.102
Carica papaya
evm.TU.supercontig_29.102
N
0.900
30190.m011006
Ricinus communis
30190.m011006
N
0.854
PK14046.1
Cannabis sativa
PK14046.1
N
0.846