TCP3 (Arabidopsis lyrata)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF03634 (TCP) IPR005333 fgenesh2_kg.1__4401__AT1G53230.1 T343838_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.975 0.586
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.975 0.586
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.975 0.586
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.958 0.452
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.955 0.446
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.934 0.376
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.894 0.357
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.882 0.350
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.879 0.344
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.870 0.306
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.843 0.299
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.843 0.299
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.841 0.306
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.837 0.280
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
fgenesh2_kg.1__4401__AT1G53230.1 TCP 47 220

Links

Other TCP family TFs
Other Arabidopsis lyrata TFs

417 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
AGOS_AGL083W Ashbya gossypii AGOS_AGL083W I 0.000
CAGL0L01903g Candida glabrata CAGL0L01903g I 0.000
Ecym_7239 Eremothecium cymbalariae Ecym_7239 I 0.000
KNAG_0A07100 Kazachstania naganishii KNAG_0A07100 I 0.000
SAKL0A09856g Lachancea kluyveri SAKL0A09856g I 0.000
NCAS_0A04750 Naumovozyma castellii NCAS_0A04750 I 0.000
NDAI_0K01800 Naumovozyma dairenensis NDAI_0K01800 I 0.000
SU7_2014 Saccharomyces arboricola SU7_2014 I 0.000
14629_YKL038W Saccharomyces bayanus 14629_YKL038W I 0.000
Scas_Contig625.5 Saccharomyces castellii Scas_Contig625.5 I 0.000
RGT1 Saccharomyces cerevisiae YKL038W D 0.000
13522_YKL038W Saccharomyces mikatae 13522_YKL038W I 0.000
13626_YKL038W Saccharomyces paradoxus 13626_YKL038W I 0.000
AACERI_AaceriAGL083W Saccharomycetaceae sp ashbya aceri AACERI_AaceriAGL083W I 0.000
TPHA_0C04280 Tetrapisispora phaffii TPHA_0C04280 I 0.000
TDEL_0B06360 Torulaspora delbrueckii TDEL_0B06360 I 0.000
ZBAI_03469 Zygosaccharomyces bailii ZBAI_03469 I 0.000
ZBAI_08469 Zygosaccharomyces bailii ZBAI_08469 I 0.000
ZYRO0E05676g Zygosaccharomyces rouxii ZYRO0E05676g I 0.000