gene04255-v1.0-hybrid (Fragaria vesca)
TCP

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF03634 (TCP) IPR005333 gene04255-v1.0-hybrid T344832_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK10344.1
M01313_2.00 		Cannabis sativa
GGGACCAC
GTGGTCCC		 PBM
Lambert et al.(2019)
pTH11464 		0.952 0.512
TCP5
M02510_2.00 		Arabidopsis lyrata
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9233 		0.947 0.537
TCP5
M02505_2.00 		Arabidopsis thaliana
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH7523 		0.947 0.520
TCP17
M07290_2.00 		Arabidopsis thaliana
GTGGGGACCAC
GTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
TCP17_col_a 		0.916 0.463
TCP17
M07291_2.00 		Arabidopsis thaliana
RTGGGGACCAC
GTGGTCCCCAY		 Dap-seq
OMalley et al.(2016)
TCP17_colamp_a 		0.916 0.463
TCP13
M07283_2.00 		Arabidopsis thaliana
GTGGGGACCACWD
HWGTGGTCCCCAC		 Dap-seq
OMalley et al.(2016)
PTF1_col_a 		0.913 0.504
TCP13
M07284_2.00 		Arabidopsis thaliana
NNBGGGACCACHN
NDGTGGTCCCVNN		 Dap-seq
OMalley et al.(2016)
PTF1_colamp_a 		0.913 0.504
LjT20A21.20.nc
M02519_2.00 		Lotus japonicus
GGGACCAY
RTGGTCCC		 PBM
Weirauch et al.(2014)
pTH9202 		0.890 0.406
OS01G0213800
M11398_2.00 		Oryza sativa Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
P$PCF5_01 		0.884 0.390
TCP3
M02500_2.00 		Arabidopsis thaliana
NDGGMCCACN
NGTGGKCCHN		 PBM
Weirauch et al.(2014)
pTH8835 		0.866 0.406
TCP3
M07274_2.00 		Arabidopsis thaliana
DHNGGGACCACH
DGTGGTCCCNDH		 Dap-seq
OMalley et al.(2016)
TCP3_colamp_a 		0.866 0.406
TCP3
M07275_2.00 		Arabidopsis thaliana
DNBGGGACCACHN
NDGTGGTCCCVNH		 Dap-seq
OMalley et al.(2016)
TCP3_col 		0.866 0.406
TCP4
M02501_2.00 		Arabidopsis thaliana
GGGACCAC
GTGGTCCC		 PBM
Weirauch et al.(2014)
pTH8084 		0.864 0.382
TCP4
M02514_2.00 		Arabidopsis lyrata
BKGGGACCAC
GTGGTCCCMV		 PBM
Weirauch et al.(2014)
pTH9313 		0.864 0.382
TCP2
M02503_2.00 		Arabidopsis thaliana
NBGGKMCCVN
NBGGKMCCVN		 PBM
Weirauch et al.(2014)
pTH8198 		0.857 0.398
TCP2
M02508_2.00 		Arabidopsis lyrata
GGSMCCAC
GTGGKSCC		 PBM
Weirauch et al.(2014)
pTH9231 		0.857 0.398
For this family, TFs with SR scores > 0.822 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
mrna04255.1-v1.0-hybrid TCP 65 227

Links

Other TCP family TFs
Other Fragaria vesca TFs

426 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
nAv.1.0.1.g05276 Acanthocheilonema viteae nAv.1.0.1.g05276 I
ACYPI008148 Acyrthosiphon pisum ACYPI008148 I
AAEL000869 Aedes aegypti AAEL000869 I
ACAC_0000515301 Angiostrongylus cantonensis ACAC_0000515301 I
AATE011452 Anopheles atroparvus AATE011452 I
ACOM022805 Anopheles coluzzii ACOM022805 I
ADIR005637 Anopheles dirus ADIR005637 I
AFAF000823 Anopheles farauti AFAF000823 I
AGAP010926 Anopheles gambiae AGAP010926 I
AMEC011115 Anopheles melas AMEC011115 I
AMEM009379 Anopheles merus AMEM009379 I
ASTEI06414 Anopheles stephensi ASTEI06414 I
GB48486 Apis mellifera GB48486 I
ENSAMXG00000016347 Astyanax mexicanus ENSAMXG00000016347 I
BGIBMGA003190 Bombyx mori BGIBMGA003190 I
Bm9493 Brugia malayi Bm9493 I
BXY_1436800 Bursaphelenchus xylophilus BXY_1436800 I
GFI1B Callithrix jacchus ENSCJAG00000018071 I
Cflo_04170--XP_001120914.1_APIME Camponotus floridanus Cflo_04170--XP_001120914.1_APIME I
CGI_10001094 Crassostrea gigas CGI_10001094 I
KGM_22443 Danaus plexippus KGM_22443 I
DILT_0000061901 Diphyllobothrium latum DILT_0000061901 I
GF10411 Drosophila ananassae FBgn0087452 I
GG13774 Drosophila erecta FBgn0106037 I
GH16734 Drosophila grimshawi FBgn0124205 I
sens Drosophila melanogaster FBgn0002573 D
GI13460 Drosophila mojavensis FBgn0136216 I
GL15695 Drosophila persimilis FBgn0153299 I
GA16696 Drosophila pseudoobscura FBgn0076711 I
GM24598 Drosophila sechellia FBgn0179461 I
GD12667 Drosophila simulans FBgn0184394 I
GJ11823 Drosophila virilis FBgn0199077 I
GK12454 Drosophila willistoni FBgn0214464 I
GE20069 Drosophila yakuba FBgn0237393 I
HCOI00212900 Haemonchus contortus HCOI00212900 I
HMEL012459 Heliconius melpomene HMEL012459 I
HelroG67579 Helobdella robusta HelroG67579 I
HelroG145685 Helobdella robusta HelroG145685 I
HelroG145534 Helobdella robusta HelroG145534 I
GFI1B Homo sapiens ENSG00000165702 D
LotgiG98465 Lottia gigantea LotgiG98465 I
LCUP007432 Lucilia cuprina LCUP007432 I
LLOJ009104 Lutzomyia longipalpis LLOJ009104 I
GFI1B Macaca mulatta ENSMMUG00000005948 I
MESCA000812 Megaselia scalaris MESCA000812 I
MhA1_Contig1061.frz3.gene12 Meloidogyne hapla MhA1_Contig1061.frz3.gene12 I
MDOA006012 Musca domestica MDOA006012 I
NV16026 Nasonia vitripennis NV16026 I
GFI1B Ochotona princeps ENSOPRG00000000125 I
ENSPTRG00000000961 Pan troglodytes ENSPTRG00000000961 I
PTRK_0000195600 Parastrongyloides trichosuri PTRK_0000195600 I
PHUM248190 Pediculus humanus PHUM248190 I
GFI1 Procavia capensis ENSPCAG00000011020 I
PXEA_0001261301 Protopolystoma xenopodis PXEA_0001261301 I
RSKR_0000656700 Rhabditophanes kr3021 RSKR_0000656700 I
SSLN_0000272801 Schistocephalus solidus SSLN_0000272801 I
SPAL_0000614400 Strongyloides papillosus SPAL_0000614400 I
SSTP_0000165900 Strongyloides stercoralis SSTP_0000165900 I
SVE_0901200 Strongyloides venezuelensis SVE_0901200 I
gfi1b Takifugu rubripes ENSTRUG00000004525 I
TC013474 Tribolium castaneum TC013474 I
WUBG_13248 Wuchereria bancrofti WUBG_13248 I
L798_01833 Zootermopsis nevadensis L798_01833 I