CIS-BP Database: Catalog of Inferred Sequence Binding Preferences

TF Information

GSPATT00017627001 *(Paramecium tetraurelia)* TCR/CxC
Pfam ID	Interpro ID	Gene ID	CIS-BP ID	Sequence source	Animal TF db
PF03638 (TCR)	IPR005172	GSPATT00017627001	T345468_2.00	Ensembl (2018-Dec-8)	Link out
Directly determined binding motifs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
No direct experiments
Motifs from related TFs
Name/Motif ID	Species	Forward	Reverse	Type/Study/Study ID	SR Score	DBD Identity
fgenesh1_pg.C_Chr_09.0001000301 M02533_2.00	Ostreococcus tauri	NNNNNRHNN	NNDYNNNNN	PBM Weirauch et al.(2014) pTH9457	0.672	0.553
AT2G20110 M02520_2.00	Arabidopsis thaliana	DTTTAAAH	DTTTAAAH	PBM Weirauch et al.(2014) pTH7914	0.672	0.500
TCX5 M02523_2.00	Arabidopsis thaliana	NRTTCAAAYN	NRTTTGAAYN	PBM Weirauch et al.(2014) pTH8164	0.672	0.500
PK22848.1 M02532_2.00	Cannabis sativa	NNNYNAAATTTNN	NNAAATTTNRNNN	PBM Weirauch et al.(2014) pTH9724	0.672	0.500
AT2G20110 M07295_2.00	Arabidopsis thaliana	WWHWAADATTYAAAW	WTTTRAATHTTWDWW	Dap-seq OMalley et al.(2016) AT2G20110_col_a	0.672	0.500
AT2G20110 M07296_2.00	Arabidopsis thaliana	WWHNAAATTYAAAHN	NDTTTRAATTTNDWW	Dap-seq OMalley et al.(2016) AT2G20110_colamp_a	0.672	0.500
AT5G25790 M01319_2.00	Arabidopsis thaliana	NHYRAAHN	NDTTYRDN	PBM Lambert et al.(2019) pTH11533	0.672	0.487
BRADI1G55710 M02525_2.00	Brachypodium distachyon	NVTBYRVABN	NVTBYRVABN	PBM Weirauch et al.(2014) pTH9241	0.672	0.487
GSPATT00010696001 M02530_2.00	Paramecium tetraurelia	NNBRAAHN	NDTTYVNN	PBM Weirauch et al.(2014) pTH8720	0.672	0.487
TCX3 M01087_2.00	Arabidopsis thaliana	NNDTTYAAAH	DTTTRAAHNN	PBM Sullivan et al.(2014) pTH7218	0.672	0.474
TCX3 M02522_2.00	Arabidopsis thaliana	WTTYAAAH	DTTTRAAW	PBM Weirauch et al.(2014) pTH7421	0.672	0.474
BGIBMGA008956 M02524_2.00	Bombyx mori	AATTTAAAW	WTTTAAATT	PBM Weirauch et al.(2014) pTH9238	0.672	0.474
lin54 M02526_2.00	Danio rerio	NHTYRAAH	DTTYRADN	PBM Weirauch et al.(2014) pTH8399	0.672	0.474
LIN54 M02527_2.00	Gallus gallus	NRTTYAAAH	DTTTRAAYN	PBM Weirauch et al.(2014) pTH8566	0.672	0.474
ENSTSYG00000005291 M02528_2.00	Tarsius syrichta	NNWDHDHWNN	NNWDHDHWNN	PBM Weirauch et al.(2014) pTH9366	0.672	0.474
SPU_025306 M02531_2.00	Strongylocentrotus purpuratus	NNNNWYRAAH	DTTYRWNNNN	PBM Weirauch et al.(2014) pTH9286	0.672	0.474
XP_002124866.1 M01321_2.00	Ciona intestinalis	NDTTYRAAN	NTTYRAAHN	PBM Lambert et al.(2019) pTH9835	0.672	0.474
fgeneshCV_pg.C_scaffold_18000164 M02534_2.00	Chlorella vulgaris	NNNNDYRAAH	DTTYRHNNNN	PBM Weirauch et al.(2014) pTH9252	0.672	0.474
gw1.20.00.89.1 M02535_2.00	Ostreococcus tauri	WNYWBVWRNW	WNYWBVWRNW	PBM Weirauch et al.(2014) pTH9647	0.672	0.474
TCX3 M07297_2.00	Arabidopsis thaliana	DWTTYRAAWTTBAAW	WTTVAAATTYRAAWH	Dap-seq OMalley et al.(2016) SOL1_colamp_a	0.672	0.474
TCX3 M07298_2.00	Arabidopsis thaliana	WTWWAAAATTYAAAW	WTTTRAATTTTWWAW	Dap-seq OMalley et al.(2016) SOL1_col	0.672	0.474
TCX2 M07300_2.00	Arabidopsis thaliana	WWTYVAAATTYRAAW	WTTYRAATTTBRAWW	Dap-seq OMalley et al.(2016) TCX2_col_a	0.672	0.474
TCX2 M07301_2.00	Arabidopsis thaliana	TTYVAAATTYRAAW	WTTYRAATTTBRAA	Dap-seq OMalley et al.(2016) TCX2_colamp_a	0.672	0.474
TCX4 M02521_2.00	Arabidopsis thaliana	DWTTYRAAWH	DWTTYRAAWH	PBM Weirauch et al.(2014) pTH7573	0.672	0.461
GE12548 M02529_2.00	Drosophila yakuba	DTTYAAAY	RTTTRAAH	PBM Weirauch et al.(2014) pTH9262	0.672	0.461
TSO1 M07299_2.00	Arabidopsis thaliana	WWWTWDAAATTYAAA	TTTRAATTTHWAWWW	Dap-seq OMalley et al.(2016) TSO1_col_a	0.672	0.461
NEMVEDRAFT_v1g111410 M01320_2.00	Nematostella vectensis	NNNNYRWRN	NYWYRNNNN	PBM Lambert et al.(2019) pTH9771	0.672	0.447
PK27683.1 M01322_2.00	Cannabis sativa	NDTTYAAAH	DTTTRAAHN	PBM Lambert et al.(2019) pTH11347	0.672	0.434
For this family, TFs with SR scores > 0.660* will likely have a similar motif*

DNA Binding Domains

Protein ID	Domain	From	To	Sequence
CAK83283	TCR/CxC	55	92	SLKCKCNKSMCLKQYCDCFANGNMCTTQCQCQGCHNTE
CAK83283	TCR/CxC	119	156	GISCKCKKSKCLKRYCDCFQNNQKCSESCQCNNCSNQV

Links
Other TCR/CxC family TFs
Other *Paramecium tetraurelia* TFs

1213 Related TFs

Name	Species	Gene ID	Motif Evidence	SR Score	Action
nAv.1.0.1.g01517	Acanthocheilonema viteae	nAv.1.0.1.g01517	I
ANCCAN_03696	Ancylostoma caninum	ANCCAN_03696	I
ACAC_0001014401	Angiostrongylus cantonensis	ACAC_0001014401	N
ACOC_0000988901	Angiostrongylus costaricensis	ACOC_0000988901	N
ASIM_0001558001	Anisakis simplex	ASIM_0001558001	I
ASU_04180	Ascaris suum	ASU_04180	I
Bm2663	Brugia malayi	Bm2663	I
BTMF_0001276401	Brugia timori	BTMF_0001276401	I
CBN10543	Caenorhabditis brenneri	CBN10543	I
CBG17980	Caenorhabditis briggsae	CBG17980	I
pal-1	Caenorhabditis elegans	WBGene00003912	D
CJA02391	Caenorhabditis japonica	CJA02391	I
CRE20227	Caenorhabditis remanei	CRE20227	I
DICVIV_02748	Dictyocaulus viviparus	DICVIV_02748	N
nDi.2.2.2.g06197	Dirofilaria immitis	nDi.2.2.2.g06197	I
EEL_0000223001	Elaeophora elaphi	EEL_0000223001	I
EVEC_0000579401	Enterobius vermicularis	EVEC_0000579401	I
HCOI01745700	Haemonchus contortus	HCOI01745700	I
HPLM_0000060301	Haemonchus placei	HPLM_0000060301	I
HPBE_0001563701	Heligmosomoides bakeri	HPBE_0001563701	I
HelroG148593	Helobdella robusta	HelroG148593	I
HelroG148587	Helobdella robusta	HelroG148587	I
HelroG148126	Helobdella robusta	HelroG148126	N
nLs.2.1.2.g09719	Litomosoides sigmodontis	nLs.2.1.2.g09719	I
LOAG_15485	Loa loa	LOAG_15485	I
ENSMODG00000025439	Monodelphis domestica	ENSMODG00000025439	I
NECAME_06333	Necator americanus	NECAME_06333	I
NBR_0000825001	Nippostrongylus brasiliensis	NBR_0000825001	I
OESDEN_25610	Oesophagostomum dentatum	OESDEN_25610	N
OESDEN_19696	Oesophagostomum dentatum	OESDEN_19696	I
OFLC_0000632501	Onchocerca flexuosa	OFLC_0000632501	I
WBGene00246390	Onchocerca volvulus	WBGene00246390	I
PEQ_0000241601	Parascaris equorum	PEQ_0000241601	N
PTRK_0001336600	Parastrongyloides trichosuri	PTRK_0001336600	I
Ppa-pal-1	Pristionchus pacificus	PPA02358	I
RSKR_0001046900	Rhabditophanes kr3021	RSKR_0001046900	I
SPAL_0001492700	Strongyloides papillosus	SPAL_0001492700	I
SSTP_0000576200	Strongyloides stercoralis	SSTP_0000576200	I
SVE_0397300	Strongyloides venezuelensis	SVE_0397300	I
SVUK_0001504901	Strongylus vulgaris	SVUK_0001504901	I
SMUV_0000918401	Syphacia muris	SMUV_0000918401	I
TCLT_0000255601	Thelazia callipaeda	TCLT_0000255601	I
TCNE_0000481301	Toxocara canis	TCNE_0000481301	N
TCNE_0001280701	Toxocara canis	TCNE_0001280701	I
EFV58119	Trichinella spiralis	EFV58119	I
WUBG_02562	Wuchereria bancrofti	WUBG_02562	I

GSPATT00017627001 (Paramecium tetraurelia) TCR/CxC

TF Information

Directly determined binding motifs

Motifs from related TFs

DNA Binding Domains

Links

1213 Related TFs

GSPATT00017627001 **(Paramecium tetraurelia)
TCR/CxC**