CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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NBR_0000825001
(
Nippostrongylus brasiliensis
)
Homeodomain
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00046 (Homeobox)
IPR001356
NBR_0000825001
T235240_2.00
WormBase:ParaSite (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
pal-1
M02183_2.00
Caenorhabditis elegans
GYAATWAA
TTWATTRC
PBM
Weirauch et al.(2014)
pTH6016
0.676
0.811
For this family, TFs with SR scores >
0.599
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
NBR_0000825001-mRNA-1
Homeodomain
64
116
DKYRMVYSDYQRLELEKEFCTSTFVTSERKAELSTLLNLTERQIKIWFQNREE
Links
Other
Homeodomain
family TFs
Other
Nippostrongylus brasiliensis
TFs
45 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
ANCCAN_03696
Ancylostoma caninum
ANCCAN_03696
I
0.790
HPBE_0001563701
Heligmosomoides bakeri
HPBE_0001563701
I
0.790
HPLM_0000060301
Haemonchus placei
HPLM_0000060301
I
0.790
NECAME_06333
Necator americanus
NECAME_06333
I
0.790
OESDEN_19696
Oesophagostomum dentatum
OESDEN_19696
I
0.790
SVUK_0001504901
Strongylus vulgaris
SVUK_0001504901
I
0.790
Ppa-pal-1
Pristionchus pacificus
PPA02358
I
0.745
LOAG_15485
Loa loa
LOAG_15485
I
0.739
ALUE_0000232801
Ascaris lumbricoides
ALUE_0000232801
I
0.739
ASIM_0001558001
Anisakis simplex
ASIM_0001558001
I
0.739
nLs.2.1.2.g09719
Litomosoides sigmodontis
nLs.2.1.2.g09719
I
0.739
WUBG_02562
Wuchereria bancrofti
WUBG_02562
I
0.729
BTMF_0001276401
Brugia timori
BTMF_0001276401
I
0.729
nAv.1.0.1.g01517
Acanthocheilonema viteae
nAv.1.0.1.g01517
I
0.729
TCNE_0001280701
Toxocara canis
TCNE_0001280701
I
0.729
SMUV_0000918401
Syphacia muris
SMUV_0000918401
I
0.725
EVEC_0000579401
Enterobius vermicularis
EVEC_0000579401
I
0.715
HCOI01745700
Haemonchus contortus
HCOI01745700
I
0.696
TCLT_0000255601
Thelazia callipaeda
TCLT_0000255601
I
0.683
CJA02391
Caenorhabditis japonica
CJA02391
I
0.678
CBG17980
Caenorhabditis briggsae
CBG17980
I
0.676
CBN10543
Caenorhabditis brenneri
CBN10543
I
0.676
CRE20227
Caenorhabditis remanei
CRE20227
I
0.676
pal-1
Caenorhabditis elegans
WBGene00003912
D
0.676
PTRK_0001336600
Parastrongyloides trichosuri
PTRK_0001336600
I
0.668
OFLC_0000632501
Onchocerca flexuosa
OFLC_0000632501
I
0.667
SPAL_0001492700
Strongyloides papillosus
SPAL_0001492700
I
0.658
SSTP_0000576200
Strongyloides stercoralis
SSTP_0000576200
I
0.658
SVE_0397300
Strongyloides venezuelensis
SVE_0397300
I
0.658
WBGene00246390
Onchocerca volvulus
WBGene00246390
I
0.656
nDi.2.2.2.g06197
Dirofilaria immitis
nDi.2.2.2.g06197
I
0.656
RSKR_0001046900
Rhabditophanes kr3021
RSKR_0001046900
I
0.654
Bm2663
Brugia malayi
Bm2663
I
0.644
ASU_04180
Ascaris suum
ASU_04180
I
0.644
EEL_0000223001
Elaeophora elaphi
EEL_0000223001
I
0.644
DICVIV_02748
Dictyocaulus viviparus
DICVIV_02748
N
0.633
OESDEN_25610
Oesophagostomum dentatum
OESDEN_25610
N
0.633
EFV58119
Trichinella spiralis
EFV58119
I
0.632
ENSMODG00000025439
Monodelphis domestica
ENSMODG00000025439
I
0.626
ACAC_0001014401
Angiostrongylus cantonensis
ACAC_0001014401
N
0.622
ACOC_0000988901
Angiostrongylus costaricensis
ACOC_0000988901
N
0.622
SMUV_0000190101
Syphacia muris
SMUV_0000190101
I
0.617
PEQ_0000241601
Parascaris equorum
PEQ_0000241601
N
0.614
TCNE_0000481301
Toxocara canis
TCNE_0000481301
N
0.614
cdx1
Xenopus tropicalis
XB-GENE-485396
I
0.611