13916_YKL112W (Saccharomyces paradoxus)
ABF1

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF04684 (BAF1_ABF1) IPR006774 13916_YKL112W T000117_2.00 Superfamily (2010-Oct-26)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ABF1
M00902_2.00 		Saccharomyces cerevisiae
CGTNNNNNRN
NYNNNNNACG		 PBM
Gordan et al.(2011)
Abf1 		0.720 0.720
ABF1
M07432_2.00 		Saccharomyces cerevisiae
NNRTCRYNNNNNACGR
YCGTNNNNNRYGAYNN		 PBM, CSA and or DIP-chip
Mathelier et al.(2014)
MA0265.1 		0.720 0.720
ABF1
M08469_2.00 		Saccharomyces cerevisiae
NNRTCRYNNNNNACGDNN
NNHCGTNNNNNRYGAYNN		 Misc
DeBoer et al.(2011)
YKL112W_791 		0.720 0.720
ABF1
M09695_2.00 		Saccharomyces cerevisiae
NNWNRTCAYKHHDNACGDDNNH
DNNHHCGTNHDDARTGAYNWNN		 Transfac
Matys et al.(2006)
F$ABF1_01 		0.720 0.720
ABF1
M09696_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ABF1_02 		0.720 0.720
ABF1
M09697_2.00 		Saccharomyces cerevisiae Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
F$ABF1_Q6 		0.720 0.720
ABF1
M09698_2.00 		Saccharomyces cerevisiae
NRTCAYKNNHNACGD
HCGTNDNNMRTGAYN		 Transfac
Matys et al.(2006)
F$ABF_C 		0.720 0.720
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
13916_YKL112W ABF1 6 140
13916_YKL112W ABF1 259 448
13916_YKL112W ABF1 602 686
13916_YKL112W ABF1 669 730

Links

Other ABF1 family TFs
Other Saccharomyces paradoxus TFs

1 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
SKUD_202011 Saccharomyces kudriavzevii SKUD_202011 N 0.742