Cla000729 (Citrullus lanatus)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cla000729 T006403_2.00 GigaDB (2015-Oct-22)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
PK24580.1
M01101_2.00 		Cannabis sativa
VGCCGGCM
KGCCGGCB		 PBM
Lambert et al.(2019)
pTH11280 		0.679 0.612
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cla000729 AP2 118 169

Links

Other AP2 family TFs
Other Citrullus lanatus TFs

16 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
VIT_01s0011g03470 Vitis vinifera VIT_01s0011g03470 I 0.707
Bo6g077880 Brassica oleracea Bo6g077880 I 0.702
Bra003462 Brassica rapa Bra003462 I 0.702
chr6.LjT13N05.60.nc Lotus japonicus chr6.LjT13N05.60.nc I 0.698
LjSGA_016572.1 Lotus japonicus LjSGA_016572.1 I 0.698
LjSGA_132504.1 Lotus japonicus LjSGA_132504.1 I 0.698
Cla008128 Citrullus lanatus Cla008128 I 0.697
Cucsa.365320 Cucumis sativus Cucsa.365320 I 0.697
PRUPE_ppa018978mg Prunus persica PRUPE_ppa018978mg N 0.696
GSMUA_Achr1G23090_001 Musa acuminata GSMUA_Achr1G23090_001 N 0.694
GSMUA_Achr5G26850_001 Musa acuminata GSMUA_Achr5G26850_001 I 0.688
MTR_8g010340 Medicago truncatula MTR_8g010340 N 0.684
Traes_5BL_C94A0F1D4 Triticum aestivum Traes_5BL_C94A0F1D4 N 0.682
GLYMA10G42130 Glycine max GLYMA10G42130 I 0.680
PK24580.1 Cannabis sativa PK24580.1 D 0.679
gene24044-v1.0-hybrid Fragaria vesca gene24044-v1.0-hybrid I 0.677