CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Bostr.7867s0965
(
Boechera stricta
)
AP2
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
IPR001471
Bostr.7867s0965
T007670_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
ERF015
M06649_2.00
Arabidopsis thaliana
YCACCGHCANHDNHNNNNNN
NNNNNNDNHDNTGDCGGTGR
Dap-seq
OMalley et al.(2016)
At4g31060_col_a
0.712
0.880
ERF015
M06650_2.00
Arabidopsis thaliana
HDYCACCGACANHNN
NNDNTGTCGGTGRHD
Dap-seq
OMalley et al.(2016)
At4g31060_colamp_a
0.712
0.880
For this family, TFs with SR scores >
0.677
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Bostr.7867s0965.1.p
AP2
25
76
KCYRGVRKRAWGKWVSEIRVPKTVRRIWLGSYDAPEKAARAYDAALFCIRGE
Links
Other
AP2
family TFs
Other
Boechera stricta
TFs
8 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Thhalv10026328m.g
Eutrema salsugineum
Thhalv10026328m.g
I
0.747
Cagra.0380s0018
Capsella grandiflora
Cagra.0380s0018
I
0.741
Carubv10006208m.g
Capsella rubella
Carubv10006208m.g
I
0.741
ERF015
Arabidopsis thaliana
AT4G31060
D
0.712
scaffold_701105.1
Arabidopsis lyrata
scaffold_701105.1
I
0.712
Bra010258
Brassica rapa
Bra010258
I
0.705
Bo1g011650
Brassica oleracea
Bo1g011650
I
0.692
Bra011244
Brassica rapa
Bra011244
I
0.692