Cagra.0380s0018 (Capsella grandiflora)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Cagra.0380s0018 T007695_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ERF015
M06649_2.00 		Arabidopsis thaliana
YCACCGHCANHDNHNNNNNN
NNNNNNDNHDNTGDCGGTGR		 Dap-seq
OMalley et al.(2016)
At4g31060_col_a 		0.761 0.959
ERF015
M06650_2.00 		Arabidopsis thaliana
HDYCACCGACANHNN
NNDNTGTCGGTGRHD		 Dap-seq
OMalley et al.(2016)
At4g31060_colamp_a 		0.761 0.959
For this family, TFs with SR scores > 0.677 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Cagra.0380s0018.1.p AP2 25 76

Links

Other AP2 family TFs
Other Capsella grandiflora TFs

9 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Carubv10006208m.g Capsella rubella Carubv10006208m.g I 0.803
Thhalv10026328m.g Eutrema salsugineum Thhalv10026328m.g I 0.797
ERF015 Arabidopsis thaliana AT4G31060 D 0.761
scaffold_701105.1 Arabidopsis lyrata scaffold_701105.1 I 0.761
Bra010258 Brassica rapa Bra010258 I 0.755
Bostr.7867s0965 Boechera stricta Bostr.7867s0965 I 0.741
Bo1g011650 Brassica oleracea Bo1g011650 I 0.719
Bra011244 Brassica rapa Bra011244 I 0.719
evm.TU.supercontig_91.71 Carica papaya evm.TU.supercontig_91.71 N 0.691