Pavir.Ea03213 (Panicum virgatum)
AP2

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2) IPR001471 Pavir.Ea03213 T009422_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea03213.1.p AP2 76 136
Pavir.Ea03213.1.p AP2 181 233
Pavir.Ea03213.2.p AP2 76 133
Pavir.Ea03213.2.p AP2 178 230

Links

Other AP2 family TFs
Other Panicum virgatum TFs

127 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si004222m.g Setaria italica Si004222m.g N 0.788
Sb03g037750 Sorghum bicolor Sb03g037750 N 0.759
GRMZM2G451031 Zea mays GRMZM2G451031 N 0.736
GRMZM2G174834 Zea mays GRMZM2G174834 I 0.721
OB01G43640 Oryza brachyantha OB01G43640 N 0.720
Eucgr.J00316 Eucalyptus grandis Eucgr.J00316 I 0.718
LPERR12G01610 Leersia perrieri LPERR12G01610 N 0.713
GLYMA02G36880 Glycine max GLYMA02G36880 I 0.712
GLYMA17G07860 Glycine max GLYMA17G07860 I 0.712
GRMZM2G124524 Zea mays GRMZM2G124524 I 0.711
Sb05g001790 Sorghum bicolor Sb05g001790 I 0.711
BGIOSGA034580 Oryza indica BGIOSGA034580 N 0.710
BGIOSGA036704 Oryza indica BGIOSGA036704 N 0.710
OMERI11G02080 Oryza meridionalis OMERI11G02080 N 0.710
OMERI12G00060 Oryza meridionalis OMERI12G00060 N 0.710
ONIVA03G39530 Oryza nivara ONIVA03G39530 N 0.710
ONIVA11G01800 Oryza nivara ONIVA11G01800 N 0.710
OPUNC11G01540 Oryza punctata OPUNC11G01540 N 0.710
OPUNC12G01560 Oryza punctata OPUNC12G01560 N 0.710
ORGLA12G0015400 Oryza glaberrima ORGLA12G0015400 N 0.710
Traes_5AL_F8DEBE8E7 Triticum aestivum Traes_5AL_F8DEBE8E7 I 0.708
Traes_5DL_2CF55DD05 Triticum aestivum Traes_5DL_2CF55DD05 I 0.708
Cucsa.282940 Cucumis sativus Cucsa.282940 N 0.707
OB11G11380 Oryza brachyantha OB11G11380 I 0.705
OB12G11690 Oryza brachyantha OB12G11690 I 0.705
ORGLA11G0014900 Oryza glaberrima ORGLA11G0014900 I 0.705
OS12G0126300 Oryza sativa OS12G0126300 I 0.705
TRIUR3_24036 Triticum urartu TRIUR3_24036 N 0.705
BRADI4G43877 Brachypodium distachyon BRADI4G43877 I 0.704
SapurV1A.0036s0830 Salix purpurea SapurV1A.0036s0830 N 0.703
Solyc03g117720.2 Solanum lycopersicum Solyc03g117720.2 I 0.702
Ciclev10025985m.g Citrus clementina Ciclev10025985m.g I 0.702
Gorai.011G225700 Gossypium raimondii Gorai.011G225700 I 0.702
orange1.1g018990m.g Citrus sinensis orange1.1g018990m.g I 0.702
POPTR_0001s03300 Populus trichocarpa POPTR_0001s03300 I 0.701
PRUPE_ppa023152mg Prunus persica PRUPE_ppa023152mg I 0.701
TCM_044588 Theobroma cacao TCM_044588 I 0.701
VIT_09s0018g01650 Vitis vinifera VIT_09s0018g01650 I 0.701
Pm008629 Prunus mume Pm008629 I 0.701
Cucsa.170790 Cucumis sativus Cucsa.170790 I 0.701
Aquca_048_00034 Aquilegia coerulea Aquca_048_00034 I 0.701
Eucgr.F03987 Eucalyptus grandis Eucgr.F03987 I 0.701
evm.TU.supercontig_199.10 Carica papaya evm.TU.supercontig_199.10 I 0.701
Gorai.012G098200 Gossypium raimondii Gorai.012G098200 I 0.701
SapurV1A.0153s0330 Salix purpurea SapurV1A.0153s0330 I 0.701
SapurV1A.1535s0040 Salix purpurea SapurV1A.1535s0040 I 0.701
SapurV1A.1603s0090 Salix purpurea SapurV1A.1603s0090 I 0.701
ADAP Arabidopsis thaliana AT1G16060 I 0.700
TCM_027569 Theobroma cacao TCM_027569 I 0.700
30069.m000440 Ricinus communis 30069.m000440 N 0.699
Thhalv10008118m.g Eutrema salsugineum Thhalv10008118m.g I 0.699
Bo6g067950 Brassica oleracea Bo6g067950 I 0.698
GRMZM2G141219 Zea mays GRMZM2G141219 I 0.698
WRI1 Arabidopsis thaliana AT3G54320 I 0.697
Bo8g083590 Brassica oleracea Bo8g083590 I 0.697
GLYMA07G02380 Glycine max GLYMA07G02380 I 0.697
GLYMA08G23630 Glycine max GLYMA08G23630 I 0.697
Bostr.0697s0045 Boechera stricta Bostr.0697s0045 I 0.697
Cagra.0562s0024 Capsella grandiflora Cagra.0562s0024 I 0.697
Carubv10018845m.g Capsella rubella Carubv10018845m.g I 0.697
Bra026082 Brassica rapa Bra026082 I 0.696
GSMUA_Achr3G03630_001 Musa acuminata GSMUA_Achr3G03630_001 I 0.696
GSMUA_Achr8G09350_001 Musa acuminata GSMUA_Achr8G09350_001 I 0.696
PK04008.1 Cannabis sativa PK04008.1 I 0.696
Aquca_016_00348 Aquilegia coerulea Aquca_016_00348 I 0.695
Lus10024101.g Linum usitatissimum Lus10024101.g I 0.695
PK26651.1 Cannabis sativa PK26651.1 I 0.695
AMTR_s00019p00086450 Amborella trichopoda AMTR_s00019p00086450 I 0.694
POPTR_0010s25340 Populus trichocarpa POPTR_0010s25340 N 0.694
cassava16315.m1 Manihot esculenta cassava16315.m1 N 0.694
Pavir.Bb02213 Panicum virgatum Pavir.Bb02213 I 0.694
Si030129m.g Setaria italica Si030129m.g I 0.693
Solyc01g096860.1 Solanum lycopersicum Solyc01g096860.1 I 0.693
Cla020765 Citrullus lanatus Cla020765 N 0.693
Lus10008939.g Linum usitatissimum Lus10008939.g N 0.692
BGIOSGA030783 Oryza indica BGIOSGA030783 I 0.691
BRADI2G53070 Brachypodium distachyon BRADI2G53070 N 0.691
BRADI4G30617 Brachypodium distachyon BRADI4G30617 I 0.691
OB09G17420 Oryza brachyantha OB09G17420 I 0.691
OGLUM09G11130 Oryza glumaepatula OGLUM09G11130 I 0.691
ONIVA09G10420 Oryza nivara ONIVA09G10420 I 0.691
ORGLA09G0079700 Oryza glaberrima ORGLA09G0079700 I 0.691
OS09G0423800 Oryza sativa OS09G0423800 I 0.691
Sb02g025080 Sorghum bicolor Sb02g025080 I 0.691
Ca_17532 Cicer arietinum Ca_17532 N 0.691
Lus10041618.g Linum usitatissimum Lus10041618.g I 0.691
Bra003178 Brassica rapa Bra003178 N 0.690
MTR_4g007770 Medicago truncatula MTR_4g007770 N 0.690
Bra007066 Brassica rapa Bra007066 N 0.689
Bra035137 Brassica rapa Bra035137 I 0.689
WRI1 Arabidopsis lyrata fgenesh2_kg.5__1822__AT3G54320.1 N 0.689
Traes_5BL_B6C71B544 Triticum aestivum Traes_5BL_B6C71B544 I 0.689
Pm017032 Prunus mume Pm017032 N 0.689
SapurV1A.0070s0630 Salix purpurea SapurV1A.0070s0630 N 0.689
Thhalv10010394m.g Eutrema salsugineum Thhalv10010394m.g N 0.689
MTR_4g130270 Medicago truncatula MTR_4g130270 I 0.688
Lus10028880.g Linum usitatissimum Lus10028880.g N 0.687
BRADI2G18570 Brachypodium distachyon BRADI2G18570 I 0.684
F775_02400 Aegilops tauschii F775_02400 I 0.684
TRIUR3_01982 Triticum urartu TRIUR3_01982 I 0.684
Bostr.20129s0410 Boechera stricta Bostr.20129s0410 I 0.684
Gorai.009G008800 Gossypium raimondii Gorai.009G008800 I 0.684
BGIOSGA028751 Oryza indica BGIOSGA028751 I 0.683
fgenesh2_kg.2__2276__AT1G79700.2 Arabidopsis lyrata fgenesh2_kg.2__2276__AT1G79700.2 I 0.683
LPERR01G30020 Leersia perrieri LPERR01G30020 N 0.683
ORGLA08G0142100 Oryza glaberrima ORGLA08G0142100 I 0.683
OS08G0442400 Oryza sativa OS08G0442400 I 0.683
evm.TU.supercontig_54.28 Carica papaya evm.TU.supercontig_54.28 N 0.683
OPUNC08G14310 Oryza punctata OPUNC08G14310 N 0.682
Gorai.009G122000 Gossypium raimondii Gorai.009G122000 I 0.682
PGSC0003DMG400027502 Solanum tuberosum PGSC0003DMG400027502 N 0.681
SELMODRAFT_85823 Selaginella moellendorffii SELMODRAFT_85823 N 0.681
AT1G79700 Arabidopsis thaliana AT1G79700 I 0.680
ADAP Arabidopsis lyrata fgenesh2_kg.1__1760__AT1G16060.1 N 0.680
OBART12G01740 Oryza barthii OBART12G01740 N 0.680
Si012026m.g Setaria italica Si012026m.g N 0.680
Si026433m.g Setaria italica Si026433m.g N 0.680
Bostr.7128s0222 Boechera stricta Bostr.7128s0222 N 0.680
Solyc06g068570.2 Solanum lycopersicum Solyc06g068570.2 I 0.679
LPERR08G13500 Leersia perrieri LPERR08G13500 N 0.677
OGLUM08G17060 Oryza glumaepatula OGLUM08G17060 N 0.677
OMERI08G13500 Oryza meridionalis OMERI08G13500 N 0.677
ONIVA08G17820 Oryza nivara ONIVA08G17820 N 0.677
ORUFI08G18170 Oryza rufipogon ORUFI08G18170 N 0.677
Lus10005253.g Linum usitatissimum Lus10005253.g N 0.677
Lus10030671.g Linum usitatissimum Lus10030671.g N 0.677