CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
Home
Tools
View cart
Bulk downloads
Database stats
Contact us
Help
Update Log
FAQ
Links
How to cite
e_gw1.63.77.1
(
Physcomitrella patens
)
AP2,B3
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
e_gw1.63.77.1
T010566_2.00
JGI (2012-Mar-17)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.726
0.726
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.726
0.726
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.726
0.726
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.726
0.726
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.726
0.726
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.726
0.726
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA
TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.712
0.712
For this family, TFs with SR scores >
0.700
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
e_gw1.63.77.1
AP2
37
86
SQFRGVVPQSNGRWGAQIYEKHQRIWLGTFNTEEEAARAYDRAAIKFRGR
e_gw1.63.77.1
B3
165
266
FDKAVTPSDVGKLNRLVIPKQHAERCFPLDLSANSPGQTLSFEDVSGKHWRFRYSYWNSSQSYVLTKGWSRFVKEKKLDAGDIVSFERGPSQELYIDFRRKQ
Links
Other
AP2,B3
family TFs
Other
Physcomitrella patens
TFs
84 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
gw1.135.126.1
Physcomitrella patens
gw1.135.126.1
I
0.938
SELMODRAFT_133669
Selaginella moellendorffii
SELMODRAFT_133669
I
0.842
SELMODRAFT_110104
Selaginella moellendorffii
SELMODRAFT_110104
I
0.842
AMTR_s00007p00238950
Amborella trichopoda
AMTR_s00007p00238950
I
0.760
cassava43329.valid.m1
Manihot esculenta
cassava43329.valid.m1
I
0.760
Ciclev10031846m.g
Citrus clementina
Ciclev10031846m.g
I
0.753
cassava12324.valid.m1
Manihot esculenta
cassava12324.valid.m1
I
0.753
PGSC0003DMG400000811
Solanum tuberosum
PGSC0003DMG400000811
I
0.753
gene03871-v1.0-hybrid
Fragaria vesca
gene03871-v1.0-hybrid
I
0.753
SapurV1A.3302s0010
Salix purpurea
SapurV1A.3302s0010
I
0.753
Thhalv10019566m.g
Eutrema salsugineum
Thhalv10019566m.g
I
0.753
orange1.1g017035m.g
Citrus sinensis
orange1.1g017035m.g
I
0.753
SapurV1A.1001s0020
Salix purpurea
SapurV1A.1001s0020
I
0.753
MDP0000128924
Malus domestica
MDP0000128924
I
0.747
Solyc04g007000.1
Solanum lycopersicum
Solyc04g007000.1
I
0.747
Gorai.008G185900
Gossypium raimondii
Gorai.008G185900
I
0.747
Solyc05g009790.1
Solanum lycopersicum
Solyc05g009790.1
I
0.747
POPTR_0010s13930
Populus trichocarpa
POPTR_0010s13930
I
0.745
POPTR_0008s11600
Populus trichocarpa
POPTR_0008s11600
I
0.740
PGSC0003DMG400007458
Solanum tuberosum
PGSC0003DMG400007458
I
0.740
mgf019592m
Mimulus guttatus
mgf019592m
I
0.740
Gorai.013G080000
Gossypium raimondii
Gorai.013G080000
I
0.740
Bostr.10273s0485
Boechera stricta
Bostr.10273s0485
I
0.740
29738.m001050
Ricinus communis
29738.m001050
I
0.740
RAV2
Arabidopsis thaliana
AT1G68840
D
0.740
TCM_011862
Theobroma cacao
TCM_011862
I
0.740
RAV2
Arabidopsis lyrata
fgenesh2_kg.2__1141__AT1G68840.1
I
0.740
VIT_01s0011g03070
Vitis vinifera
VIT_01s0011g03070
I
0.733
Pm029015
Prunus mume
Pm029015
I
0.733
Cagra.1157s0007
Capsella grandiflora
Cagra.1157s0007
I
0.733
RAV1
Arabidopsis lyrata
scaffold_101479.1
I
0.733
PRUPE_ppa006243mg
Prunus persica
PRUPE_ppa006243mg
I
0.733
Thhalv10010019m.g
Eutrema salsugineum
Thhalv10010019m.g
I
0.733
GSMUA_Achr5G09950_001
Musa acuminata
GSMUA_Achr5G09950_001
I
0.733
PK15652.1
Cannabis sativa
PK15652.1
I
0.727
Bra026917
Brassica rapa
Bra026917
I
0.726
Cucsa.283870
Cucumis sativus
Cucsa.283870
I
0.726
Bo3g138550
Brassica oleracea
Bo3g138550
I
0.726
Carubv10009612m.g
Capsella rubella
Carubv10009612m.g
I
0.726
Bra019821
Brassica rapa
Bra019821
I
0.726
Carubv10020536m.g
Capsella rubella
Carubv10020536m.g
I
0.726
Cagra.3501s0173
Capsella grandiflora
Cagra.3501s0173
I
0.726
Bostr.13671s0120
Boechera stricta
Bostr.13671s0120
I
0.726
Bo5g015210
Brassica oleracea
Bo5g015210
I
0.726
Cla020675
Citrullus lanatus
Cla020675
I
0.726
GLYMA02G11060
Glycine max
GLYMA02G11060
I
0.726
Thhalv10004508m.g
Eutrema salsugineum
Thhalv10004508m.g
I
0.726
Ca_08436
Cicer arietinum
Ca_08436
I
0.726
GLYMA10G34760
Glycine max
GLYMA10G34760
I
0.726
MDP0000939633
Malus domestica
MDP0000939633
I
0.720
SapurV1A.0079s0450
Salix purpurea
SapurV1A.0079s0450
I
0.720
Bo5g043120
Brassica oleracea
Bo5g043120
I
0.719
GLYMA20G32730
Glycine max
GLYMA20G32730
I
0.719
Carubv10019207m.g
Capsella rubella
Carubv10019207m.g
I
0.719
GRMZM2G159592
Zea mays
GRMZM2G159592
I
0.719
Bra024735
Brassica rapa
Bra024735
I
0.719
GLYMA01G22260
Glycine max
GLYMA01G22260
I
0.719
EDF3
Arabidopsis lyrata
fgenesh2_kg.5__327__AT3G25730.1
I
0.719
Aquca_002_01106
Aquilegia coerulea
Aquca_002_01106
I
0.719
Gorai.005G138100
Gossypium raimondii
Gorai.005G138100
I
0.719
Thhalv10007983m.g
Eutrema salsugineum
Thhalv10007983m.g
I
0.712
Bo2g061320
Brassica oleracea
Bo2g061320
I
0.712
Pavir.J13012
Panicum virgatum
Pavir.J13012
I
0.712
Bo2g138650
Brassica oleracea
Bo2g138650
I
0.712
ARF14
Arabidopsis thaliana
AT3G25730
D
0.712
Aquca_026_00225
Aquilegia coerulea
Aquca_026_00225
I
0.712
Bra038346
Brassica rapa
Bra038346
I
0.712
GRMZM2G059939
Zea mays
GRMZM2G059939
I
0.712
Ca_24123
Cicer arietinum
Ca_24123
I
0.712
Si024576m.g
Setaria italica
Si024576m.g
I
0.712
Bra026509
Brassica rapa
Bra026509
I
0.712
TEM1
Arabidopsis lyrata
scaffold_102941.1
I
0.712
Eucgr.B03048
Eucalyptus grandis
Eucgr.B03048
I
0.707
MTR_1g093600
Medicago truncatula
MTR_1g093600
I
0.707
RAV1
Arabidopsis thaliana
AT1G13260
D
0.707
GSMUA_Achr4G06710_001
Musa acuminata
GSMUA_Achr4G06710_001
I
0.705
SELMODRAFT_66538
Selaginella moellendorffii
SELMODRAFT_66538
N
0.705
Pavir.Ca01826
Panicum virgatum
Pavir.Ca01826
I
0.705
Bostr.0556s0243
Boechera stricta
Bostr.0556s0243
I
0.705
Bostr.12659s0398
Boechera stricta
Bostr.12659s0398
I
0.705
Lus10041487.g
Linum usitatissimum
Lus10041487.g
I
0.705
OPUNC05G22370
Oryza punctata
OPUNC05G22370
I
0.705
Bra011002
Brassica rapa
Bra011002
I
0.705
SELMODRAFT_71153
Selaginella moellendorffii
SELMODRAFT_71153
N
0.705