e_gw1.63.77.1 (Physcomitrella patens)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3)
IPR001471
IPR003340
e_gw1.63.77.1 T010566_2.00 JGI (2012-Mar-17)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
RAV1
M06692_2.00
Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN

NNHHMDDDWDDWWTHTGTTGN
Dap-seq
OMalley et al.(2016)
RAV1_colamp_a
0.726 0.726
RAV1
M06693_2.00
Arabidopsis thaliana
VCAACADAWWHHAYNHB

VDNRTDDWWTHTGTTGB
Dap-seq
OMalley et al.(2016)
RAV1_col
0.726 0.726
RAV1
M02649_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
SELEX
Mathelier et al.(2014)
MA0582.1
0.726 0.726
RAV1
M02650_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
SELEX
Mathelier et al.(2014)
MA0583.1
0.726 0.726
RAV1
M09748_2.00
Arabidopsis thaliana
VNSCAACAKWDN

NHWMTGTTGSNB
Transfac
Matys et al.(2006)
P$RAV1_01
0.726 0.726
RAV1
M09749_2.00
Arabidopsis thaliana
NHCWCCTGRNNH

DNNYCAGGWGDN
Transfac
Matys et al.(2006)
P$RAV1_02
0.726 0.726
ARF14
M01648_2.00
Arabidopsis thaliana
RCAACAKA

TMTGTTGY
PBM
Weirauch et al.(2014)
pTH8727
0.712 0.712
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
e_gw1.63.77.1 AP2 37 86
e_gw1.63.77.1 B3 165 266

Links

Other AP2,B3 family TFs
Other Physcomitrella patens TFs

84 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.938
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.842
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.842
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.760
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.760
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.753
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.753
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.753
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.753
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.753
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.753
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.753
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.753
MDP0000128924 Malus domestica MDP0000128924 I 0.747
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.747
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.747
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.747
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.745
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.740
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.740
mgf019592m Mimulus guttatus mgf019592m I 0.740
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.740
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.740
29738.m001050 Ricinus communis 29738.m001050 I 0.740
RAV2 Arabidopsis thaliana AT1G68840 D 0.740
TCM_011862 Theobroma cacao TCM_011862 I 0.740
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.740
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.733
Pm029015 Prunus mume Pm029015 I 0.733
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.733
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.733
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.733
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.733
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.733
PK15652.1 Cannabis sativa PK15652.1 I 0.727
Bra026917 Brassica rapa Bra026917 I 0.726
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.726
Bo3g138550 Brassica oleracea Bo3g138550 I 0.726
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.726
Bra019821 Brassica rapa Bra019821 I 0.726
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.726
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.726
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.726
Bo5g015210 Brassica oleracea Bo5g015210 I 0.726
Cla020675 Citrullus lanatus Cla020675 I 0.726
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.726
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.726
Ca_08436 Cicer arietinum Ca_08436 I 0.726
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.726
MDP0000939633 Malus domestica MDP0000939633 I 0.720
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.720
Bo5g043120 Brassica oleracea Bo5g043120 I 0.719
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.719
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.719
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.719
Bra024735 Brassica rapa Bra024735 I 0.719
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.719
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.719
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.719
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.719
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.712
Bo2g061320 Brassica oleracea Bo2g061320 I 0.712
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.712
Bo2g138650 Brassica oleracea Bo2g138650 I 0.712
ARF14 Arabidopsis thaliana AT3G25730 D 0.712
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.712
Bra038346 Brassica rapa Bra038346 I 0.712
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.712
Ca_24123 Cicer arietinum Ca_24123 I 0.712
Si024576m.g Setaria italica Si024576m.g I 0.712
Bra026509 Brassica rapa Bra026509 I 0.712
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.712
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.707
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.707
RAV1 Arabidopsis thaliana AT1G13260 D 0.707
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.705
SELMODRAFT_66538 Selaginella moellendorffii SELMODRAFT_66538 N 0.705
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.705
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.705
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.705
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.705
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.705
Bra011002 Brassica rapa Bra011002 I 0.705
SELMODRAFT_71153 Selaginella moellendorffii SELMODRAFT_71153 N 0.705