GLYMA20G32730 (Glycine max)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		GLYMA20G32730 T010439_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.839 0.839
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.839 0.839
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.839 0.839
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.839 0.839
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.839 0.839
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.839 0.839
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.792 0.792
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
GLYMA20G32730.1 AP2 58 107
GLYMA20G32730.1 B3 178 291

Links

Other AP2,B3 family TFs
Other Glycine max TFs

173 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.953
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.933
Ca_08436 Cicer arietinum Ca_08436 I 0.907
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.873
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.872
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.867
MDP0000128924 Malus domestica MDP0000128924 I 0.867
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.867
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.866
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.860
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.860
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.860
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.859
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.859
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.859
Pm029015 Prunus mume Pm029015 I 0.853
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.853
RAV2 Arabidopsis thaliana AT1G68840 D 0.853
29738.m001050 Ricinus communis 29738.m001050 I 0.853
MDP0000939633 Malus domestica MDP0000939633 I 0.853
TCM_011862 Theobroma cacao TCM_011862 I 0.853
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.852
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.847
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.847
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.847
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.847
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.847
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.847
Cla020675 Citrullus lanatus Cla020675 I 0.847
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.846
PK15652.1 Cannabis sativa PK15652.1 I 0.840
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.840
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.840
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.840
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.840
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.840
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.840
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.840
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.840
Ca_24123 Cicer arietinum Ca_24123 I 0.839
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.839
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.839
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.839
RAV1 Arabidopsis thaliana AT1G13260 D 0.833
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.833
mgf019592m Mimulus guttatus mgf019592m I 0.832
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.827
Bra026917 Brassica rapa Bra026917 I 0.827
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.827
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.827
Bra024735 Brassica rapa Bra024735 I 0.826
Bo5g043120 Brassica oleracea Bo5g043120 I 0.826
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.822
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.822
Si024576m.g Setaria italica Si024576m.g I 0.822
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.820
Bo5g015210 Brassica oleracea Bo5g015210 I 0.820
Bra019821 Brassica rapa Bra019821 I 0.820
Bra011002 Brassica rapa Bra011002 I 0.820
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.819
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.819
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.819
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.819
Bo3g138550 Brassica oleracea Bo3g138550 I 0.819
Bra038346 Brassica rapa Bra038346 I 0.813
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.813
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.812
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.812
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.811
Bo2g061320 Brassica oleracea Bo2g061320 I 0.807
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.807
OS05G0549800 Oryza sativa OS05G0549800 I 0.805
Cla000872 Citrullus lanatus Cla000872 I 0.805
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.803
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.800
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.800
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.799
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.799
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.799
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.796
OBART01G27360 Oryza barthii OBART01G27360 I 0.795
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.795
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.795
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.795
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.795
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.795
OS01G0693400 Oryza sativa OS01G0693400 I 0.795
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.795
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.793
ARF14 Arabidopsis thaliana AT3G25730 D 0.792
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.792
OB01G12600 Oryza brachyantha OB01G12600 I 0.791
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.787
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.787
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.785
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.785
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.782
Bo2g138650 Brassica oleracea Bo2g138650 I 0.780
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.776
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.772
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.772
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.772
Bra026509 Brassica rapa Bra026509 I 0.772
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.767
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.767
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.765
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.765
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.764
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.764
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.762
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.762
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.762
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.762
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.757
Si004045m.g Setaria italica Si004045m.g I 0.757
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.755
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.754
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.753
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.752
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.752
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.752
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.752
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.752
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.752
Eucgr.D00053 Eucalyptus grandis Eucgr.D00053 I 0.747
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.747
Si001909m.g Setaria italica Si001909m.g I 0.747
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.745
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.745
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.745
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.742
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.738
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.738
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.738
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.738
OBART01G02610 Oryza barthii OBART01G02610 I 0.738
OS01G0140700 Oryza sativa OS01G0140700 I 0.738
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.738
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.738
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.738
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.738
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.736
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.736
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.735
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.733
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.733
TCM_019508 Theobroma cacao TCM_019508 I 0.733
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.733
OS01G0141000 Oryza sativa OS01G0141000 I 0.733
Eucgr.L01673 Eucalyptus grandis Eucgr.L01673 I 0.733
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.733
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.733
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.733
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.733
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.732
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.731
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.727
Pm015500 Prunus mume Pm015500 I 0.727
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.727
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.727
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.727
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.727
Bra025159 Brassica rapa Bra025159 I 0.727
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.720
e_gw1.63.77.1 Physcomitrella patens e_gw1.63.77.1 I 0.719
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.718
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.711
MDP0000945267 Malus domestica MDP0000945267 I 0.707
gene10330-v1.0-hybrid Fragaria vesca gene10330-v1.0-hybrid N 0.707
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.707
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.705
LjSGA_080421.2 Lotus japonicus LjSGA_080421.2 I 0.703
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.700