Si004045m.g (Setaria italica)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Si004045m.g T010520_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.757 0.757
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.757 0.757
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.757 0.757
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.757 0.757
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.757 0.757
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.757 0.757
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.743 0.743
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Si004045m AP2 79 128
Si004045m B3 214 320

Links

Other AP2,B3 family TFs
Other Setaria italica TFs

163 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.980
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.973
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.905
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.885
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.884
OBART01G27360 Oryza barthii OBART01G27360 I 0.884
OS01G0693400 Oryza sativa OS01G0693400 I 0.884
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.884
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.884
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.884
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.884
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.871
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.865
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.851
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.851
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.850
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.838
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.838
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.832
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.831
OS05G0549800 Oryza sativa OS05G0549800 I 0.831
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.831
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.831
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.815
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.811
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.811
Si024576m.g Setaria italica Si024576m.g I 0.811
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.811
OS01G0141000 Oryza sativa OS01G0141000 I 0.811
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.811
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.811
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.811
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.811
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.804
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.797
MDP0000128924 Malus domestica MDP0000128924 I 0.797
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.797
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.791
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.787
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.787
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.786
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.785
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.784
Pm029015 Prunus mume Pm029015 I 0.784
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.784
PK15652.1 Cannabis sativa PK15652.1 I 0.780
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.779
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.777
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.777
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.777
MDP0000939633 Malus domestica MDP0000939633 I 0.773
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.770
Ca_24123 Cicer arietinum Ca_24123 I 0.770
mgf019592m Mimulus guttatus mgf019592m I 0.770
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.767
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.767
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.764
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.764
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.764
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.764
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.764
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.764
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.764
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.764
TCM_011862 Theobroma cacao TCM_011862 I 0.764
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.760
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.760
Ca_08436 Cicer arietinum Ca_08436 I 0.757
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.757
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.757
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.757
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.757
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.757
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.757
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.757
Bo5g015210 Brassica oleracea Bo5g015210 I 0.757
OB01G12600 Oryza brachyantha OB01G12600 I 0.757
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.757
Bra019821 Brassica rapa Bra019821 I 0.757
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.757
Cla020675 Citrullus lanatus Cla020675 I 0.753
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.753
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.753
Cla000872 Citrullus lanatus Cla000872 I 0.752
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.752
Bra026917 Brassica rapa Bra026917 I 0.750
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.750
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.750
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.750
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.750
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.750
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.750
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.750
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.750
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.750
RAV2 Arabidopsis thaliana AT1G68840 D 0.750
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.747
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.747
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.747
RAV1 Arabidopsis thaliana AT1G13260 D 0.747
29738.m001050 Ricinus communis 29738.m001050 I 0.747
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.745
OBART01G02610 Oryza barthii OBART01G02610 I 0.743
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.743
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.743
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.743
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.743
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.743
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.743
OS01G0140700 Oryza sativa OS01G0140700 I 0.743
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.743
ARF14 Arabidopsis thaliana AT3G25730 D 0.743
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.743
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.743
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.743
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.743
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.743
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.743
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.743
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.743
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.743
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.742
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.740
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.738
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.738
Si001909m.g Setaria italica Si001909m.g I 0.736
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.736
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.736
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.736
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.736
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.736
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.736
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.736
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.733
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.733
Bra011002 Brassica rapa Bra011002 I 0.733
Bo3g138550 Brassica oleracea Bo3g138550 I 0.730
Bo5g043120 Brassica oleracea Bo5g043120 I 0.730
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.730
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.730
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.730
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.730
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.730
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.730
F775_20035 Aegilops tauschii F775_20035 N 0.730
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.730
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.725
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.725
Bra024735 Brassica rapa Bra024735 I 0.725
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.723
Bra038346 Brassica rapa Bra038346 I 0.723
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.723
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.723
Bo2g061320 Brassica oleracea Bo2g061320 I 0.720
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.716
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.716
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.709
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.707
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.703
Pm015500 Prunus mume Pm015500 I 0.703
Bra026509 Brassica rapa Bra026509 I 0.703
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.700
Bo2g138650 Brassica oleracea Bo2g138650 I 0.700