BRADI2G17610 (Brachypodium distachyon)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		BRADI2G17610 T010431_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.780 0.780
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.759 0.759
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.759 0.759
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.759 0.759
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.759 0.759
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.759 0.759
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.759 0.759
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
BRADI2G17610.1 AP2 90 139
BRADI2G17610.1 B3 216 326

Links

Other AP2,B3 family TFs
Other Brachypodium distachyon TFs

161 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.872
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.872
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.865
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.865
OS05G0549800 Oryza sativa OS05G0549800 I 0.858
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.858
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.851
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.851
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.844
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.839
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.837
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.837
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.829
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.826
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.823
Si024576m.g Setaria italica Si024576m.g I 0.822
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.822
Si004045m.g Setaria italica Si004045m.g I 0.811
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.809
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.809
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.808
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.808
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.808
OS01G0693400 Oryza sativa OS01G0693400 I 0.808
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.808
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.808
OBART01G27360 Oryza barthii OBART01G27360 I 0.808
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.805
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.805
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.801
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.801
Ca_24123 Cicer arietinum Ca_24123 I 0.801
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.801
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.796
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.796
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.794
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.794
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.787
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.787
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.787
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.780
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.780
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.780
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.780
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.780
Pm029015 Prunus mume Pm029015 I 0.780
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.780
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.780
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.780
ARF14 Arabidopsis thaliana AT3G25730 D 0.780
OS01G0141000 Oryza sativa OS01G0141000 I 0.780
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.780
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.776
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.773
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.773
mgf019592m Mimulus guttatus mgf019592m I 0.773
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.773
TCM_011862 Theobroma cacao TCM_011862 I 0.773
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.773
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.773
Cla020675 Citrullus lanatus Cla020675 I 0.767
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.767
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.767
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.766
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.766
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.766
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.766
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.766
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.762
PK15652.1 Cannabis sativa PK15652.1 I 0.760
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.760
Bra026917 Brassica rapa Bra026917 I 0.759
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.759
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.759
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.759
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.758
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.754
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.753
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.753
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.752
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.752
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.752
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.752
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.752
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.752
OBART01G02610 Oryza barthii OBART01G02610 I 0.752
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.752
OS01G0140700 Oryza sativa OS01G0140700 I 0.752
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.752
Bo3g138550 Brassica oleracea Bo3g138550 I 0.752
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.747
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.747
MDP0000128924 Malus domestica MDP0000128924 I 0.747
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.745
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.745
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.745
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.740
RAV2 Arabidopsis thaliana AT1G68840 D 0.740
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.740
Ca_08436 Cicer arietinum Ca_08436 I 0.740
Bra011002 Brassica rapa Bra011002 I 0.740
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.740
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.740
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.738
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.738
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.738
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.738
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.738
Bra026509 Brassica rapa Bra026509 I 0.738
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.736
OB01G12600 Oryza brachyantha OB01G12600 I 0.736
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.736
MDP0000939633 Malus domestica MDP0000939633 I 0.733
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.733
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.733
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.733
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.733
Si001909m.g Setaria italica Si001909m.g I 0.733
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.733
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.733
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.732
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.732
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.728
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.727
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.727
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.727
29738.m001050 Ricinus communis 29738.m001050 I 0.727
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.725
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.725
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.725
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.723
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.723
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.723
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.721
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.720
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.720
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.720
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.720
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.720
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.720
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.720
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.720
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.720
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.718
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.718
Cla000872 Citrullus lanatus Cla000872 I 0.718
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.714
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.714
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.713
Bra019821 Brassica rapa Bra019821 I 0.713
RAV1 Arabidopsis thaliana AT1G13260 D 0.713
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.713
Bo5g015210 Brassica oleracea Bo5g015210 I 0.713
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.711
Bra024735 Brassica rapa Bra024735 I 0.705
Bo5g043120 Brassica oleracea Bo5g043120 I 0.705
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.702
F775_20035 Aegilops tauschii F775_20035 N 0.700
Bo2g138650 Brassica oleracea Bo2g138650 I 0.700
Bo2g061320 Brassica oleracea Bo2g061320 I 0.700
Bra038346 Brassica rapa Bra038346 I 0.700