Pavir.Ea02092 (Panicum virgatum)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Pavir.Ea02092 T010628_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.764 0.764
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.764 0.764
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.764 0.764
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.764 0.764
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.764 0.764
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.764 0.764
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Ea02092.1.p AP2 107 156
Pavir.Ea02092.1.p B3 240 347

Links

Other AP2,B3 family TFs
Other Panicum virgatum TFs

162 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.980
Si004045m.g Setaria italica Si004045m.g I 0.973
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.905
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.885
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.877
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.877
OBART01G27360 Oryza barthii OBART01G27360 I 0.877
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.877
OS01G0693400 Oryza sativa OS01G0693400 I 0.877
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.877
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.877
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.871
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.858
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.851
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.851
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.851
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.838
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.837
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.833
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.831
OS05G0549800 Oryza sativa OS05G0549800 I 0.831
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.826
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.826
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.826
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.826
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.822
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.815
Si024576m.g Setaria italica Si024576m.g I 0.815
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.804
OS01G0141000 Oryza sativa OS01G0141000 I 0.804
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.804
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.804
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.804
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.804
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.804
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.797
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.797
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.793
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.787
MDP0000128924 Malus domestica MDP0000128924 I 0.787
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.786
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.784
Pm029015 Prunus mume Pm029015 I 0.784
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.784
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.782
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.780
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.777
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.777
PK15652.1 Cannabis sativa PK15652.1 I 0.773
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.773
MDP0000939633 Malus domestica MDP0000939633 I 0.773
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.773
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.772
mgf019592m Mimulus guttatus mgf019592m I 0.770
TCM_011862 Theobroma cacao TCM_011862 I 0.770
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.767
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.767
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.764
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.764
Ca_24123 Cicer arietinum Ca_24123 I 0.764
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.764
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.764
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.764
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.760
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.760
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.760
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.760
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.760
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.760
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.758
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.757
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.757
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.757
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.757
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.757
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.757
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.757
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.753
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.753
RAV1 Arabidopsis thaliana AT1G13260 D 0.753
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.753
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.753
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.753
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.753
Bo5g015210 Brassica oleracea Bo5g015210 I 0.753
Bra019821 Brassica rapa Bra019821 I 0.753
Cla020675 Citrullus lanatus Cla020675 I 0.753
Bra026917 Brassica rapa Bra026917 I 0.753
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.753
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.753
29738.m001050 Ricinus communis 29738.m001050 I 0.753
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.752
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.752
Cla000872 Citrullus lanatus Cla000872 I 0.752
ARF14 Arabidopsis thaliana AT3G25730 D 0.750
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.750
OB01G12600 Oryza brachyantha OB01G12600 I 0.750
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.750
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.747
RAV2 Arabidopsis thaliana AT1G68840 D 0.747
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.747
Ca_08436 Cicer arietinum Ca_08436 I 0.747
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.747
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.745
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.745
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.745
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.743
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.742
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.740
Bra011002 Brassica rapa Bra011002 I 0.740
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.740
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.740
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.738
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.738
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.736
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.736
OBART01G02610 Oryza barthii OBART01G02610 I 0.736
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.736
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.736
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.736
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.736
Bo3g138550 Brassica oleracea Bo3g138550 I 0.736
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.736
OS01G0140700 Oryza sativa OS01G0140700 I 0.736
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.735
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.733
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.733
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.733
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.733
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.733
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.732
Bo5g043120 Brassica oleracea Bo5g043120 I 0.732
Bra024735 Brassica rapa Bra024735 I 0.732
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.732
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.732
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.730
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.730
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.730
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.728
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.728
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.725
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.725
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.725
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.723
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.723
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.723
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.723
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.723
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.723
Si001909m.g Setaria italica Si001909m.g I 0.720
Bo2g061320 Brassica oleracea Bo2g061320 I 0.720
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.718
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.716
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.714
F775_20035 Aegilops tauschii F775_20035 N 0.713
Bra038346 Brassica rapa Bra038346 I 0.713
Bra026509 Brassica rapa Bra026509 I 0.709
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.707
Bo2g138650 Brassica oleracea Bo2g138650 I 0.707
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.703
Si012228m.g Setaria italica Si012228m.g N 0.702
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.700