Pavir.Eb02845 (Panicum virgatum)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Pavir.Eb02845 T010631_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.764 0.764
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.764 0.764
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.764 0.764
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.764 0.764
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.764 0.764
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.764 0.764
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.750 0.750
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb02845.1.p AP2 72 121
Pavir.Eb02845.1.p B3 200 307

Links

Other AP2,B3 family TFs
Other Panicum virgatum TFs

169 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Si004045m.g Setaria italica Si004045m.g I 0.980
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.980
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.917
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.906
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.884
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.884
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.884
OS01G0693400 Oryza sativa OS01G0693400 I 0.884
OBART01G27360 Oryza barthii OBART01G27360 I 0.884
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.884
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.884
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.878
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.877
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.875
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.872
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.872
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.872
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.852
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.846
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.846
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.846
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.846
OS05G0549800 Oryza sativa OS05G0549800 I 0.846
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.844
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.842
BGIOSGA000982 Oryza indica BGIOSGA000982 I 0.841
Si024576m.g Setaria italica Si024576m.g I 0.836
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.836
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.829
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.800
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.800
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.800
OS01G0141000 Oryza sativa OS01G0141000 I 0.800
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.800
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.800
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.794
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.793
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.793
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.793
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.789
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.787
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.787
MDP0000128924 Malus domestica MDP0000128924 I 0.787
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.785
PK15652.1 Cannabis sativa PK15652.1 I 0.780
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.779
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.773
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.773
MDP0000939633 Malus domestica MDP0000939633 I 0.773
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.773
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.773
Pm029015 Prunus mume Pm029015 I 0.773
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.771
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.769
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.767
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.767
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.767
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.767
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.765
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.761
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.760
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.760
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.760
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.760
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.760
Ca_24123 Cicer arietinum Ca_24123 I 0.760
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.760
mgf019592m Mimulus guttatus mgf019592m I 0.760
TCM_011862 Theobroma cacao TCM_011862 I 0.760
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.758
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.757
OB01G12600 Oryza brachyantha OB01G12600 I 0.757
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.754
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.753
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.753
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.753
Bra026917 Brassica rapa Bra026917 I 0.753
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.753
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.753
Cla020675 Citrullus lanatus Cla020675 I 0.753
29738.m001050 Ricinus communis 29738.m001050 I 0.753
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.753
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.753
Bra019821 Brassica rapa Bra019821 I 0.753
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.753
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.753
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.753
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.753
RAV1 Arabidopsis thaliana AT1G13260 D 0.753
Bo5g015210 Brassica oleracea Bo5g015210 I 0.753
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.753
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.753
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.752
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.752
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.750
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.750
ARF14 Arabidopsis thaliana AT3G25730 D 0.750
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.748
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.747
Ca_08436 Cicer arietinum Ca_08436 I 0.747
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.747
RAV2 Arabidopsis thaliana AT1G68840 D 0.747
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.747
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.745
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.745
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.745
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.745
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.745
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.745
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.743
OS01G0140700 Oryza sativa OS01G0140700 I 0.743
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.743
OBART01G02610 Oryza barthii OBART01G02610 I 0.743
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.743
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.743
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.743
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.743
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.742
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.740
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.740
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.740
Bra011002 Brassica rapa Bra011002 I 0.740
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.740
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.740
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.740
GSMUA_AchrUn_randomG06880_001 Musa acuminata GSMUA_AchrUn_randomG06880_001 I 0.738
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.738
Pavir.Eb00702 Panicum virgatum Pavir.Eb00702 I 0.738
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.738
Cla000872 Citrullus lanatus Cla000872 I 0.738
Bo3g138550 Brassica oleracea Bo3g138550 I 0.736
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.736
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.735
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.735
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.733
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.733
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.733
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.733
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.733
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.732
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.732
Bo5g043120 Brassica oleracea Bo5g043120 I 0.732
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.732
Bra024735 Brassica rapa Bra024735 I 0.732
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.730
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.730
Bo2g061320 Brassica oleracea Bo2g061320 I 0.727
Si001909m.g Setaria italica Si001909m.g I 0.727
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.725
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.725
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.721
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.720
F775_20035 Aegilops tauschii F775_20035 N 0.720
Bra038346 Brassica rapa Bra038346 I 0.720
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.720
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.720
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.720
Si012228m.g Setaria italica Si012228m.g N 0.710
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.709
Bo2g138650 Brassica oleracea Bo2g138650 I 0.707
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.707
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.707
PGSC0003DMG400007458 Solanum tuberosum PGSC0003DMG400007458 I 0.705
LjSGA_080421.2 Lotus japonicus LjSGA_080421.2 I 0.703
gw1.135.126.1 Physcomitrella patens gw1.135.126.1 I 0.702
Pm015500 Prunus mume Pm015500 I 0.700
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.700
Bra026509 Brassica rapa Bra026509 I 0.700
PRUPE_ppa026046mg Prunus persica PRUPE_ppa026046mg I 0.700