Pavir.Eb00702 (Panicum virgatum)
AP2,B3

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00847 (AP2)
PF02362 (B3) 		IPR001471
IPR003340 		Pavir.Eb00702 T010630_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
RAV1
M06692_2.00 		Arabidopsis thaliana
NCAACADAWWHHWHHHKDDNN
NNHHMDDDWDDWWTHTGTTGN		 Dap-seq
OMalley et al.(2016)
RAV1_colamp_a 		0.752 0.752
RAV1
M06693_2.00 		Arabidopsis thaliana
VCAACADAWWHHAYNHB
VDNRTDDWWTHTGTTGB		 Dap-seq
OMalley et al.(2016)
RAV1_col 		0.752 0.752
RAV1
M02649_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 SELEX
Mathelier et al.(2014)
MA0582.1 		0.752 0.752
RAV1
M02650_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 SELEX
Mathelier et al.(2014)
MA0583.1 		0.752 0.752
RAV1
M09748_2.00 		Arabidopsis thaliana
VNSCAACAKWDN
NHWMTGTTGSNB		 Transfac
Matys et al.(2006)
P$RAV1_01 		0.752 0.752
RAV1
M09749_2.00 		Arabidopsis thaliana
NHCWCCTGRNNH
DNNYCAGGWGDN		 Transfac
Matys et al.(2006)
P$RAV1_02 		0.752 0.752
ARF14
M01648_2.00 		Arabidopsis thaliana
RCAACAKA
TMTGTTGY		 PBM
Weirauch et al.(2014)
pTH8727 		0.732 0.732
For this family, TFs with SR scores > 0.700 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
Pavir.Eb00702.1.p AP2 79 128
Pavir.Eb00702.1.p B3 194 300

Links

Other AP2,B3 family TFs
Other Panicum virgatum TFs

164 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Pavir.J23476 Panicum virgatum Pavir.J23476 I 0.987
Pavir.Ea00549 Panicum virgatum Pavir.Ea00549 I 0.980
Sb03g006590 Sorghum bicolor Sb03g006590 I 0.953
Si001909m.g Setaria italica Si001909m.g I 0.926
OMERI01G02500 Oryza meridionalis OMERI01G02500 I 0.899
ONIVA01G02990 Oryza nivara ONIVA01G02990 I 0.899
OS01G0141000 Oryza sativa OS01G0141000 I 0.899
BGIOSGA002748 Oryza indica BGIOSGA002748 I 0.899
ORUFI01G02680 Oryza rufipogon ORUFI01G02680 I 0.899
BGIOSGA002753 Oryza indica BGIOSGA002753 I 0.899
OB01G12600 Oryza brachyantha OB01G12600 I 0.893
ORGLA01G0022600 Oryza glaberrima ORGLA01G0022600 I 0.893
Traes_3B_90BE2090B Triticum aestivum Traes_3B_90BE2090B I 0.886
MLOC_7940 Hordeum vulgare MLOC_7940 I 0.886
OPUNC01G02240 Oryza punctata OPUNC01G02240 I 0.884
BRADI2G02720 Brachypodium distachyon BRADI2G02720 I 0.872
TRAES3BF098200010CFD_g Triticum aestivum TRAES3BF098200010CFD_g I 0.872
TRAES3BF108500010CFD_g Triticum aestivum TRAES3BF108500010CFD_g I 0.872
MLOC_75135 Hordeum vulgare MLOC_75135 I 0.872
Traes_3B_DF7E924991 Triticum aestivum Traes_3B_DF7E924991 I 0.872
Traes_3B_DF7E92499 Triticum aestivum Traes_3B_DF7E92499 I 0.872
LPERR01G02380 Leersia perrieri LPERR01G02380 I 0.872
OGLUM01G02850 Oryza glumaepatula OGLUM01G02850 I 0.866
OBART01G02610 Oryza barthii OBART01G02610 I 0.866
TRIUR3_24851 Triticum urartu TRIUR3_24851 I 0.866
OS01G0140700 Oryza sativa OS01G0140700 I 0.866
OMERI01G02480 Oryza meridionalis OMERI01G02480 I 0.866
ONIVA01G02970 Oryza nivara ONIVA01G02970 I 0.866
BGIOSGA002747 Oryza indica BGIOSGA002747 I 0.866
ORUFI01G02660 Oryza rufipogon ORUFI01G02660 I 0.866
ORGLA01G0022400 Oryza glaberrima ORGLA01G0022400 I 0.866
MLOC_56567 Hordeum vulgare MLOC_56567 I 0.859
LPERR01G02360 Leersia perrieri LPERR01G02360 I 0.852
Pavir.J00384 Panicum virgatum Pavir.J00384 I 0.849
Pavir.Eb00701 Panicum virgatum Pavir.Eb00701 I 0.839
BRADI2G02710 Brachypodium distachyon BRADI2G02710 I 0.839
TRIUR3_27886 Triticum urartu TRIUR3_27886 I 0.832
Pavir.Ca01165 Panicum virgatum Pavir.Ca01165 I 0.831
MLOC_5512 Hordeum vulgare MLOC_5512 I 0.826
TRAES3BF062700040CFD_g Triticum aestivum TRAES3BF062700040CFD_g I 0.823
TRAES3BF098300010CFD_g Triticum aestivum TRAES3BF098300010CFD_g I 0.820
TRAES3BF062600010CFD_g Triticum aestivum TRAES3BF062600010CFD_g I 0.819
MLOC_63261 Hordeum vulgare MLOC_63261 I 0.812
Pavir.J13012 Panicum virgatum Pavir.J13012 I 0.795
Pavir.Ca01826 Panicum virgatum Pavir.Ca01826 I 0.795
GSMUA_Achr5G09950_001 Musa acuminata GSMUA_Achr5G09950_001 I 0.793
PK15652.1 Cannabis sativa PK15652.1 I 0.793
Gorai.013G080000 Gossypium raimondii Gorai.013G080000 I 0.792
MDP0000128924 Malus domestica MDP0000128924 I 0.792
PGSC0003DMG400000811 Solanum tuberosum PGSC0003DMG400000811 I 0.785
Ca_24123 Cicer arietinum Ca_24123 I 0.785
gene03871-v1.0-hybrid Fragaria vesca gene03871-v1.0-hybrid I 0.785
Cla020675 Citrullus lanatus Cla020675 I 0.780
Cucsa.283870 Cucumis sativus Cucsa.283870 I 0.780
MTR_1g093600 Medicago truncatula MTR_1g093600 I 0.780
MTR_5g053920 Medicago truncatula MTR_5g053920 I 0.780
OPUNC05G22370 Oryza punctata OPUNC05G22370 I 0.779
Si024576m.g Setaria italica Si024576m.g I 0.779
GSMUA_Achr4G06710_001 Musa acuminata GSMUA_Achr4G06710_001 I 0.779
GLYMA02G11060 Glycine max GLYMA02G11060 I 0.779
GLYMA10G34760 Glycine max GLYMA10G34760 I 0.779
SapurV1A.1001s0020 Salix purpurea SapurV1A.1001s0020 I 0.779
mgf019592m Mimulus guttatus mgf019592m I 0.779
SapurV1A.3302s0010 Salix purpurea SapurV1A.3302s0010 I 0.779
SapurV1A.0079s0450 Salix purpurea SapurV1A.0079s0450 I 0.773
cassava43329.valid.m1 Manihot esculenta cassava43329.valid.m1 I 0.773
VIT_01s0011g03070 Vitis vinifera VIT_01s0011g03070 I 0.773
Sb09g027530 Sorghum bicolor Sb09g027530 I 0.772
TCM_011862 Theobroma cacao TCM_011862 I 0.772
Lus10041487.g Linum usitatissimum Lus10041487.g I 0.772
Gorai.008G185900 Gossypium raimondii Gorai.008G185900 I 0.772
PRUPE_ppa006243mg Prunus persica PRUPE_ppa006243mg I 0.772
Pm029015 Prunus mume Pm029015 I 0.772
Carubv10020536m.g Capsella rubella Carubv10020536m.g I 0.772
Solyc05g009790.1 Solanum lycopersicum Solyc05g009790.1 I 0.772
POPTR_0008s11600 Populus trichocarpa POPTR_0008s11600 I 0.772
OGLUM05G26380 Oryza glumaepatula OGLUM05G26380 I 0.772
GRMZM2G059939 Zea mays GRMZM2G059939 I 0.772
GLYMA20G32730 Glycine max GLYMA20G32730 I 0.772
F775_20035 Aegilops tauschii F775_20035 N 0.772
OMERI05G22110 Oryza meridionalis OMERI05G22110 I 0.772
GRMZM2G169654 Zea mays GRMZM2G169654 I 0.772
BRADI2G47220 Brachypodium distachyon BRADI2G47220 I 0.769
LPERR01G23470 Leersia perrieri LPERR01G23470 I 0.769
29738.m001050 Ricinus communis 29738.m001050 I 0.767
OPUNC01G27280 Oryza punctata OPUNC01G27280 I 0.767
OS01G0693400 Oryza sativa OS01G0693400 I 0.767
ORUFI01G30390 Oryza rufipogon ORUFI01G30390 I 0.767
OBART01G27360 Oryza barthii OBART01G27360 I 0.767
ORGLA01G0225300 Oryza glaberrima ORGLA01G0225300 I 0.767
MDP0000939633 Malus domestica MDP0000939633 I 0.767
Eucgr.B03048 Eucalyptus grandis Eucgr.B03048 I 0.767
Ciclev10031846m.g Citrus clementina Ciclev10031846m.g I 0.767
orange1.1g017035m.g Citrus sinensis orange1.1g017035m.g I 0.767
OMERI01G25110 Oryza meridionalis OMERI01G25110 I 0.767
Ca_08436 Cicer arietinum Ca_08436 I 0.767
RAV2 Arabidopsis thaliana AT1G68840 D 0.767
ONIVA01G31290 Oryza nivara ONIVA01G31290 I 0.767
OS05G0549800 Oryza sativa OS05G0549800 I 0.765
Lus10021707.g Linum usitatissimum Lus10021707.g I 0.765
POPTR_0010s13930 Populus trichocarpa POPTR_0010s13930 I 0.765
GLYMA01G22260 Glycine max GLYMA01G22260 I 0.765
Cagra.1157s0007 Capsella grandiflora Cagra.1157s0007 I 0.765
Thhalv10019566m.g Eutrema salsugineum Thhalv10019566m.g I 0.765
GSMUA_Achr2G22560_001 Musa acuminata GSMUA_Achr2G22560_001 I 0.765
cassava12324.valid.m1 Manihot esculenta cassava12324.valid.m1 I 0.765
GSMUA_Achr3G21100_001 Musa acuminata GSMUA_Achr3G21100_001 I 0.765
Sb09g004140 Sorghum bicolor Sb09g004140 N 0.760
LPERR05G20600 Leersia perrieri LPERR05G20600 I 0.758
Aquca_026_00225 Aquilegia coerulea Aquca_026_00225 I 0.758
Carubv10009612m.g Capsella rubella Carubv10009612m.g I 0.758
RAV1 Arabidopsis lyrata scaffold_101479.1 I 0.758
Cagra.3501s0173 Capsella grandiflora Cagra.3501s0173 I 0.758
ONIVA05G26000 Oryza nivara ONIVA05G26000 I 0.758
BGIOSGA020315 Oryza indica BGIOSGA020315 I 0.758
Bostr.10273s0485 Boechera stricta Bostr.10273s0485 I 0.753
RAV2 Arabidopsis lyrata fgenesh2_kg.2__1141__AT1G68840.1 I 0.753
Thhalv10010019m.g Eutrema salsugineum Thhalv10010019m.g I 0.753
Bra024735 Brassica rapa Bra024735 I 0.752
Bostr.12659s0398 Boechera stricta Bostr.12659s0398 I 0.752
OGLUM01G31260 Oryza glumaepatula OGLUM01G31260 I 0.752
Aquca_002_01106 Aquilegia coerulea Aquca_002_01106 I 0.752
Bo5g043120 Brassica oleracea Bo5g043120 I 0.752
Cla000872 Citrullus lanatus Cla000872 I 0.752
Cucsa.147340 Cucumis sativus Cucsa.147340 I 0.750
AMTR_s00007p00238950 Amborella trichopoda AMTR_s00007p00238950 I 0.747
Bostr.13671s0120 Boechera stricta Bostr.13671s0120 I 0.747
RAV1 Arabidopsis thaliana AT1G13260 D 0.747
TEM1 Arabidopsis lyrata scaffold_102941.1 I 0.747
Sb03g031860 Sorghum bicolor Sb03g031860 I 0.745
Bo3g138550 Brassica oleracea Bo3g138550 I 0.745
Bra026917 Brassica rapa Bra026917 I 0.745
Thhalv10007983m.g Eutrema salsugineum Thhalv10007983m.g I 0.745
Bo5g015210 Brassica oleracea Bo5g015210 I 0.745
Bra019821 Brassica rapa Bra019821 I 0.745
Si004045m.g Setaria italica Si004045m.g I 0.743
Bra038346 Brassica rapa Bra038346 I 0.740
Bra011002 Brassica rapa Bra011002 I 0.740
Bo2g061320 Brassica oleracea Bo2g061320 I 0.740
Thhalv10004508m.g Eutrema salsugineum Thhalv10004508m.g I 0.738
Pavir.Eb02845 Panicum virgatum Pavir.Eb02845 I 0.738
EDF3 Arabidopsis lyrata fgenesh2_kg.5__327__AT3G25730.1 I 0.738
GSMUA_Achr1G05400_001 Musa acuminata GSMUA_Achr1G05400_001 I 0.738
GSMUA_Achr6G01420_001 Musa acuminata GSMUA_Achr6G01420_001 I 0.738
OPUNC01G02270 Oryza punctata OPUNC01G02270 N 0.738
Gorai.005G138100 Gossypium raimondii Gorai.005G138100 I 0.738
Pavir.Ea02092 Panicum virgatum Pavir.Ea02092 I 0.732
ARF14 Arabidopsis thaliana AT3G25730 D 0.732
GRMZM2G159592 Zea mays GRMZM2G159592 I 0.732
Carubv10019207m.g Capsella rubella Carubv10019207m.g I 0.732
Si012228m.g Setaria italica Si012228m.g N 0.725
BRADI2G17610 Brachypodium distachyon BRADI2G17610 I 0.725
Bostr.0556s0243 Boechera stricta Bostr.0556s0243 I 0.720
Ciclev10012300m.g Citrus clementina Ciclev10012300m.g I 0.718
Bo2g138650 Brassica oleracea Bo2g138650 I 0.713
GSMUA_Achr8G18260_001 Musa acuminata GSMUA_Achr8G18260_001 I 0.711
SELMODRAFT_110104 Selaginella moellendorffii SELMODRAFT_110104 I 0.711
SELMODRAFT_133669 Selaginella moellendorffii SELMODRAFT_133669 I 0.711
orange1.1g021945m.g Citrus sinensis orange1.1g021945m.g I 0.711
GSMUA_Achr1G21250_001 Musa acuminata GSMUA_Achr1G21250_001 I 0.711
Pm015500 Prunus mume Pm015500 I 0.707
Bra026509 Brassica rapa Bra026509 I 0.705
Solyc04g007000.1 Solanum lycopersicum Solyc04g007000.1 I 0.705
VIT_14s0083g00130 Vitis vinifera VIT_14s0083g00130 I 0.700