CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cagra.0993s0065
(
Capsella grandiflora
)
BBR
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF06217 (GAGA_bind)
IPR010409
Cagra.0993s0065
T024828_2.00
JGI:Phytozome (2018-Apr-12)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No TFs with similar DNA binding domains
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cagra.0993s0065.1.p
BBR
6
229
SQNLMLSAPKANKDAGLRTSNANWFHSYIAVPNTTGVDLSQVSQASPVESMMVPQSRLSHPITVDYRNGVESVEQKSTNQSLSKALKPKTPRKKRATSDKSKKTPSIPETKREKKNLDINIDISSFDTSGVPPPVCSCTGVSRVCYKWGMGGWQSSCCTISISTYPLPMSTTRPGARLAGRKMSNGAYVKLLVRLAGEGYNLSHPVDLKNHWARHGTNKFVTIK
Links
Other
BBR
family TFs
Other
Capsella grandiflora
TFs
3 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Ocbimv22014894m.g
Octopus bimaculoides
Ocbimv22014894m.g
I
1.000
Carubv10023994m.g
Capsella rubella
Carubv10023994m.g
N
0.991
Traes_4BL_011308A76
Triticum aestivum
Traes_4BL_011308A76
I
0.707