fgenesh_masked-pir_contig_606-abinit-gene-0.23 (Pythium irregulare)
BED ZF

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF02892 (zf-BED) IPR003656 fgenesh_masked-pir_contig_606-abinit-gene-0.23 T026476_2.00 Ensembl (2018-Dec-8) Link out
NCBI Gene Info:
This gene encodes a multifunctional proinflammatory cytokine that belongs to the tumor necrosis factor (TNF) superfamily. This cytokine is mainly secreted by macrophages. It can bind to, and thus functions through its receptors TNFRSF1A/TNFR1 and TNFRSF1B/TNFBR. This cytokine is involved in the regulation of a wide spectrum of biological processes including cell proliferation, differentiation, apoptosis, lipid metabolism, and coagulation. This cytokine has been implicated in a variety of diseases, including autoimmune diseases, insulin resistance, psoriasis, rheumatoid arthritis ankylosing spondylitis, tuberculosis, autosomal dominant polycystic kidney disease, and cancer. Mutations in this gene affect susceptibility to cerebral malaria, septic shock, and Alzheimer disease. Knockout studies in mice also suggested the neuroprotective function of this cytokine. [provided by RefSeq, Aug 2020]

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score
DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
EPrPI00000020702 BED ZF 57 103

Links

Other BED ZF family TFs
Other Pythium irregulare TFs

10 Related TFs

Name Species Gene ID Motif Evidence SR
Score
Action
maker-pag1_scaffold_281-snap-gene-0.12 Pythium aphanidermatum maker-pag1_scaffold_281-snap-gene-0.12 N 0.927
maker-piw_contig_1546-fgenesh-gene-0.1 Pythium iwayamai maker-piw_contig_1546-fgenesh-gene-0.1 N 0.927
PYU1_G007526 Pythium ultimum PYU1_G007526 N 0.829
maker-par_contig_782-fgenesh-gene-0.0 Pythium arrhenomanes maker-par_contig_782-fgenesh-gene-0.0 N 0.829
fgenesh_scip_prom.28083.1893 Phytophthora lateralis fgenesh_scip_prom.28083.1893 N 0.805
Phyra75461 Phytophthora ramorum Phyra75461 N 0.805
maker-pve_contig_450-fgenesh-gene-0.9 Pythium vexans maker-pve_contig_450-fgenesh-gene-0.9 N 0.805
fgenesh_scip_prom.46568.3443 Phytophthora kernoviae fgenesh_scip_prom.46568.3443 N 0.805
ALNC14_092890 Albugo laibachii ALNC14_092890 N 0.780
Physo142161 Phytophthora sojae Physo142161 N 0.756