tcf3a (Tetraodon nigroviridis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source Animal TF db
PF00010 (HLH) IPR001092 ENSTNIG00000015322 T037779_2.00 Ensembl (2018-Dec-8) Link out

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
Tcf3
M09465_2.00 		Mus musculus
ABWTCAAAGS
SCTTTGAWVT		 Misc
Heinz et al.(2010)
mES-Tcf3_GSE11724 		0.888 0.846
Tcf3
M09466_2.00 		Mus musculus
VCAGCTGBNN
NNVCAGCTGB		 Misc
Heinz et al.(2010)
proBcell-E2A_GSE21978 		0.888 0.846
Tcf3
M09886_2.00 		Mus musculus Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E47_05 		0.888 0.846
TCF3
M02775_2.00 		Homo sapiens
NVCACCTGBN
NVCAGGTGBN		 SELEX
Jolma et al.(2013)
TCF3_1 		0.860 0.846
TCF3
M08710_2.00 		Homo sapiens
VVCASCTGCHN
NDGCAGSTGBB		 Misc
Kulakovskiy et al.(2013)
TFE2_HUMAN.H11MO.0.A 		0.860 0.846
TCF3
M09791_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E12_Q6 		0.860 0.846
TCF3
M09792_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_01 		0.860 0.846
TCF3
M09793_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$E2A_Q6_02 		0.860 0.846
TCF3
M09794_2.00 		Homo sapiens
VVVVMCACCTGCNBB
VVNGCAGGTGKBBBB		 Transfac
Matys et al.(2006)
V$E47_01 		0.860 0.846
TCF3
M09795_2.00 		Homo sapiens
NNKWRCACCTGYDNNN
NNNHRCAGGTGYWMNN		 Transfac
Matys et al.(2006)
V$E47_02 		0.860 0.846
Tcf12
M01740_2.00 		Mus musculus
NVCAYCTGB
VCAGRTGBN		 PBM
Weirauch et al.(2014)
pTH5071 		0.860 0.827
TCF12
M04137_2.00 		Homo sapiens
VCACSTGB
VCASGTGB		 SELEX
Yin et al.(2017)
TCF12_eDBD_HT-SELEX 		0.860 0.827
Tcf12
M08062_2.00 		Mus musculus
RRCAGCTGNNN
NNNCAGCTGYY		 ChIP-seq
Mathelier et al.(2014)
MA0521.1 		0.860 0.827
TCF12
M07805_2.00 		Homo sapiens
NVDSCAGSTGB
VCASCTGSHBN		 ChIP-seq
Gerstein et al.(2012)
GM12878_TCF12_HudsonAlpha 		0.860 0.827
TCF12
M07806_2.00 		Homo sapiens
VCASCTGB
VCAGSTGB		 ChIP-seq
Gerstein et al.(2012)
H1-hESC_TCF12_HudsonAlpha 		0.860 0.827
TCF12
M08731_2.00 		Homo sapiens
CMCASCTGSH
DSCAGSTGKG		 Misc
Kulakovskiy et al.(2013)
HTF4_HUMAN.H11MO.0.A 		0.860 0.827
Tcf12
M08762_2.00 		Mus musculus
VMCASCTGSH
DSCAGSTGKB		 Misc
Kulakovskiy et al.(2013)
HTF4_MOUSE.H11MO.0.A 		0.860 0.827
TCF12
M09458_2.00 		Homo sapiens
NNVCAGCTGB
VCAGCTGBNN		 Misc
Heinz et al.(2010)
GM12878-Tcf12_GSE32465 		0.860 0.827
TCF12
M09858_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HEB_Q6 		0.860 0.827
TCF12
M09859_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$HTF4_Q2 		0.860 0.827
TCF12
M09860_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_01 		0.860 0.827
TCF12
M09861_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_03 		0.860 0.827
TCF12
M09862_2.00 		Homo sapiens Transfac license required
 Transfac license required
 Transfac
Matys et al.(2006)
V$TCF12_05 		0.860 0.827
TCF12
M04138_2.00 		Homo sapiens
NCAYCTGN
NCAGRTGN		 SELEX
Yin et al.(2017)
TCF12_eDBD_Methyl-HT-SELEX 		0.860 0.827
Tcf3
M00753_2.00 		Mus musculus
VCACCTGBN
NVCAGGTGB		 PBM
Weirauch et al.(2013)
pTH3866 		0.860 0.788
Tcf3
M01723_2.00 		Mus musculus
NNVCACSTGB
VCASGTGBNN		 PBM
Weirauch et al.(2014)
pTH4580 		0.860 0.788
Tcf3
M00118_2.00 		Mus musculus
VCAYCTGB
VCAGRTGB		 PBM
Badis et al.(2009)
Tcfe2a_3865 		0.860 0.788
Tcf4
M01750_2.00 		Mus musculus
VCAGVTGBN
NVCABCTGB		 PBM
Weirauch et al.(2014)
pTH5101 		0.858 0.788
TCF4
M02807_2.00 		Homo sapiens
HRCACCTGBN
NVCAGGTGYD		 SELEX
Jolma et al.(2013)
TCF4_1 		0.858 0.788
TCF4
M02808_2.00 		Homo sapiens
NVCACCTBBN
NVVAGGTGBN		 SELEX
Jolma et al.(2013)
TCF4_2 		0.858 0.788
TCF4
M02728_2.00 		Homo sapiens
RCACCTG
CAGGTGY		 SELEX
Jolma et al.(2010)
TCF4_dimer 		0.858 0.788
TCF4
M04214_2.00 		Homo sapiens
VCACCTGB
VCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_HT-SELEX 		0.858 0.788
Tcf4
M08775_2.00 		Mus musculus
HRCACCTGB
VCAGGTGYD		 Misc
Kulakovskiy et al.(2013)
ITF2_MOUSE.H11MO.0.B 		0.858 0.788
TCF4
M09461_2.00 		Homo sapiens
ASWTCAAAGRVN
NBYCTTTGAWST		 Misc
Heinz et al.(2010)
Hct116-Tcf4_SRA012054 		0.858 0.788
TCF4
M04215_2.00 		Homo sapiens
VCACCTGN
NCAGGTGB		 SELEX
Yin et al.(2017)
TCF4_eDBD_Methyl-HT-SELEX 		0.858 0.788
For this family, TFs with SR scores > 0.838 will likely have a similar motif

DNA Binding Domains

Protein ID Domain From To Sequence
ENSTNIP00000018385 bHLH 531 584

Links

Other bHLH family TFs
Other Tetraodon nigroviridis TFs

198 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
tcf3a Takifugu rubripes ENSTRUG00000008147 I 0.914
ENSAMXG00000006548 Astyanax mexicanus ENSAMXG00000006548 I 0.888
tcf3a Danio rerio ENSDARG00000005915 I 0.888
tcf3b Danio rerio ENSDARG00000099999 I 0.888
tcf3b Gasterosteus aculeatus ENSGACG00000012737 I 0.888
tcf3a Gasterosteus aculeatus ENSGACG00000015282 I 0.888
ENSGMOG00000008934 Gadus morhua ENSGMOG00000008934 I 0.888
ENSGMOG00000012207 Gadus morhua ENSGMOG00000012207 I 0.888
ENSLOCG00000006013 Lepisosteus oculatus ENSLOCG00000006013 I 0.888
Tcf3 Mus musculus ENSMUSG00000020167 D 0.888
ENSONIG00000004816 Oreochromis niloticus ENSONIG00000004816 I 0.888
tcf3b Oryzias latipes ENSORLG00000004923 I 0.888
ENSPFOG00000001904 Poecilia formosa ENSPFOG00000001904 I 0.888
Tcf3 Rattus norvegicus ENSRNOG00000051499 I 0.888
ENSXMAG00000012718 Xiphophorus maculatus ENSXMAG00000012718 I 0.888
Ocbimv22006241m.g Octopus bimaculoides Ocbimv22006241m.g I 0.888
TCF12 Anolis carolinensis ENSACAG00000014277 I 0.860
ENSAMEG00000003503 Ailuropoda melanoleuca ENSAMEG00000003503 I 0.860
ENSAMEG00000010612 Ailuropoda melanoleuca ENSAMEG00000010612 I 0.860
ENSAMXG00000014804 Astyanax mexicanus ENSAMXG00000014804 I 0.860
ENSAPLG00000001939 Anas platyrhynchos ENSAPLG00000001939 I 0.860
TCF12 Bos taurus ENSBTAG00000002586 I 0.860
TCF3 Bos taurus ENSBTAG00000008695 I 0.860
TCF12 Canis familiaris ENSCAFG00000016200 I 0.860
TCF12 Choloepus hoffmanni ENSCHOG00000003168 I 0.860
TCF12 Cavia porcellus ENSCPOG00000009153 I 0.860
TCF3 Cavia porcellus ENSCPOG00000023586 I 0.860
ENSCSAG00000011901 Chlorocebus sabaeus ENSCSAG00000011901 I 0.860
tcf12 Danio rerio ENSDARG00000004714 I 0.860
ENSDNOG00000042880 Dasypus novemcinctus ENSDNOG00000042880 I 0.860
Tcf3 Dipodomys ordii ENSDORG00000004745 I 0.860
TCF3 Equus caballus ENSECAG00000000623 I 0.860
TCF12 Equus caballus ENSECAG00000011678 I 0.860
TCF12 Erinaceus europaeus ENSEEUG00000002182 I 0.860
TCF3 Echinops telfairi ENSETEG00000015388 I 0.860
ENSFALG00000011409 Ficedula albicollis ENSFALG00000011409 I 0.860
ENSFALG00000012146 Ficedula albicollis ENSFALG00000012146 I 0.860
TCF12 Felis catus ENSFCAG00000031674 I 0.860
TCF3 Homo sapiens ENSG00000071564 D 0.860
TCF12 Homo sapiens ENSG00000140262 D 0.860
TCF12 Gasterosteus aculeatus ENSGACG00000006101 I 0.860
tcf12 Gasterosteus aculeatus ENSGACG00000015831 I 0.860
TCF3 Gallus gallus ENSGALG00000001093 I 0.860
TCF12 Gallus gallus ENSGALG00000004304 I 0.860
TCF12 Gorilla gorilla ENSGGOG00000008166 I 0.860
ENSGMOG00000004189 Gadus morhua ENSGMOG00000004189 I 0.860
ENSLACG00000014145 Latimeria chalumnae ENSLACG00000014145 I 0.860
ENSLACG00000016589 Latimeria chalumnae ENSLACG00000016589 I 0.860
TCF12 Loxodonta africana ENSLAFG00000010546 I 0.860
TCF3 Loxodonta africana ENSLAFG00000026277 I 0.860
ENSLOCG00000013539 Lepisosteus oculatus ENSLOCG00000013539 I 0.860
ENSMEUG00000014058 Macropus eugenii ENSMEUG00000014058 I 0.860
TCF3 Meleagris gallopavo ENSMGAG00000002388 I 0.860
ENSMGAG00000005667 Meleagris gallopavo ENSMGAG00000005667 I 0.860
TCF12 Microcebus murinus ENSMICG00000009110 I 0.860
TCF12 Myotis lucifugus ENSMLUG00000006205 I 0.860
TCF3 Myotis lucifugus ENSMLUG00000011221 I 0.860
TCF12 Macaca mulatta ENSMMUG00000004091 I 0.860
TCF3 Monodelphis domestica ENSMODG00000004143 I 0.860
TCF12 Monodelphis domestica ENSMODG00000008311 I 0.860
ENSMPUG00000004438 Mustela putorius furo ENSMPUG00000004438 I 0.860
ENSMPUG00000008024 Mustela putorius furo ENSMPUG00000008024 I 0.860
Tcf12 Mus musculus ENSMUSG00000032228 D 0.860
ENSNLEG00000001742 Nomascus leucogenys ENSNLEG00000001742 I 0.860
ENSNLEG00000006707 Nomascus leucogenys ENSNLEG00000006707 I 0.860
TCF12 Ornithorhynchus anatinus ENSOANG00000009462 I 0.860
TCF3 Ornithorhynchus anatinus ENSOANG00000014335 I 0.860
ENSOARG00000012495 Ovis aries ENSOARG00000012495 I 0.860
ENSOARG00000020872 Ovis aries ENSOARG00000020872 I 0.860
TCF12 Oryctolagus cuniculus ENSOCUG00000017812 I 0.860
TCF3 Otolemur garnettii ENSOGAG00000003587 I 0.860
TCF12 Otolemur garnettii ENSOGAG00000006485 I 0.860
ENSONIG00000005794 Oreochromis niloticus ENSONIG00000005794 I 0.860
ENSONIG00000008337 Oreochromis niloticus ENSONIG00000008337 I 0.860
ENSONIG00000010206 Oreochromis niloticus ENSONIG00000010206 I 0.860
TCF12 Oryzias latipes ENSORLG00000005330 I 0.860
tcf12 Oryzias latipes ENSORLG00000008508 I 0.860
ENSPANG00000016063 Papio anubis ENSPANG00000016063 I 0.860
ENSPANG00000017265 Papio anubis ENSPANG00000017265 I 0.860
ENSPFOG00000004140 Poecilia formosa ENSPFOG00000004140 I 0.860
ENSPFOG00000024249 Poecilia formosa ENSPFOG00000024249 I 0.860
ENSPPYG00000006505 Pongo abelii ENSPPYG00000006505 I 0.860
ENSPPYG00000009327 Pongo abelii ENSPPYG00000009327 I 0.860
ENSPSIG00000004202 Pelodiscus sinensis ENSPSIG00000004202 I 0.860
ENSPSIG00000011880 Pelodiscus sinensis ENSPSIG00000011880 I 0.860
TCF12 Pan troglodytes ENSPTRG00000007109 I 0.860
TCF3 Pan troglodytes ENSPTRG00000010211 I 0.860
TCF12 Pteropus vampyrus ENSPVAG00000006184 I 0.860
TCF3 Pteropus vampyrus ENSPVAG00000014587 I 0.860
Tcf12 Rattus norvegicus ENSRNOG00000057754 I 0.860
TCF12 Sorex araneus ENSSARG00000013798 I 0.860
ENSSHAG00000013735 Sarcophilus harrisii ENSSHAG00000013735 I 0.860
ENSSHAG00000015935 Sarcophilus harrisii ENSSHAG00000015935 I 0.860
TCF3 Sus scrofa ENSSSCG00000013437 I 0.860
ENSSTOG00000001523 Ictidomys tridecemlineatus ENSSTOG00000001523 I 0.860
ENSSTOG00000010293 Ictidomys tridecemlineatus ENSSTOG00000010293 I 0.860
TCF12 Tupaia belangeri ENSTBEG00000002192 I 0.860
TCF3 Taeniopygia guttata ENSTGUG00000000208 I 0.860
TCF12 Taeniopygia guttata ENSTGUG00000006270 I 0.860
ENSTNIG00000013705 Tetraodon nigroviridis ENSTNIG00000013705 I 0.860
TCF12 Takifugu rubripes ENSTRUG00000008110 I 0.860
tcf3b Takifugu rubripes ENSTRUG00000017901 I 0.860
ENSTSYG00000009264 Tarsius syrichta ENSTSYG00000009264 I 0.860
TCF12 Tursiops truncatus ENSTTRG00000010817 I 0.860
TCF12 Vicugna pacos ENSVPAG00000006545 I 0.860
ENSXMAG00000006665 Xiphophorus maculatus ENSXMAG00000006665 I 0.860
ENSXMAG00000014303 Xiphophorus maculatus ENSXMAG00000014303 I 0.860
Aan_R011701 Calypte anna Aan_R011701 I 0.860
Aan_R011985 Calypte anna Aan_R011985 I 0.860
Afo_R010055 Aptenodytes forsteri Afo_R010055 I 0.860
Afo_R014990 Aptenodytes forsteri Afo_R014990 I 0.860
Alligator_sinensis_CCG017304.1 Alligator sinensis Alligator_sinensis_CCG017304.1 I 0.860
Brh_R007211 Buceros rhinoceros Brh_R007211 I 0.860
Cmyd_10006706 Chelonia mydas Cmyd_10006706 I 0.860
ENSBTAP00000028599-D1 Bos grunniens ENSBTAP00000028599-D1 I 0.860
ENSBTAP00000048638-D1 Bos grunniens ENSBTAP00000048638-D1 I 0.860
ENSP00000331057 Macaca fascicularis ENSP00000331057 I 0.860
ENSP00000378813 Macaca fascicularis ENSP00000378813 I 0.860
Gfo_R004309 Geospiza fortis Gfo_R004309 I 0.860
Gfo_R007595 Geospiza fortis Gfo_R007595 I 0.860
Myotis_brandtii_Tcf12_10010436 Myotis brandtii Myotis_brandtii_Tcf12_10010436 I 0.860
Ogr01318 Ophisaurus gracilis Ogr01318 I 0.860
Ogr11405 Ophisaurus gracilis Ogr11405 I 0.860
Pvit_09822 Pogona vitticeps Pvit_09822 I 0.860
Pvit_17395 Pogona vitticeps Pvit_17395 I 0.860
Sakowv30044282m.g Saccoglossus kowalevskii Sakowv30044282m.g I 0.860
AAA92050 Xenopus laevis AAA92050 I 0.860
AAH44064 Xenopus laevis AAH44064 I 0.860
tcf12 Xenopus tropicalis XB-GENE-5799694 I 0.860
tcf12.L Xenopus laevis XB-GENE-5799717 I 0.860
TCF4 Anolis carolinensis ENSACAG00000008863 I 0.858
ENSAMEG00000017162 Ailuropoda melanoleuca ENSAMEG00000017162 I 0.858
ENSAMXG00000009833 Astyanax mexicanus ENSAMXG00000009833 I 0.858
ENSAPLG00000011135 Anas platyrhynchos ENSAPLG00000011135 I 0.858
TCF4 Bos taurus ENSBTAG00000016462 I 0.858
TCF4 Canis familiaris ENSCAFG00000000140 I 0.858
TCF4 Choloepus hoffmanni ENSCHOG00000000331 I 0.858
TCF4 Callithrix jacchus ENSCJAG00000004038 I 0.858
ENSCSAG00000018141 Chlorocebus sabaeus ENSCSAG00000018141 I 0.858
ENSDNOG00000013859 Dasypus novemcinctus ENSDNOG00000013859 I 0.858
Tcf4 Dipodomys ordii ENSDORG00000012697 I 0.858
TCF4 Equus caballus ENSECAG00000017265 I 0.858
TCF4 Erinaceus europaeus ENSEEUG00000000134 I 0.858
TCF4 Felis catus ENSFCAG00000014682 I 0.858
TCF4 Homo sapiens ENSG00000196628 D 0.858
ENSGACG00000000628 Gasterosteus aculeatus ENSGACG00000000628 I 0.858
TCF4 Gorilla gorilla ENSGGOG00000016297 I 0.858
ENSGMOG00000015710 Gadus morhua ENSGMOG00000015710 I 0.858
ENSGMOG00000018104 Gadus morhua ENSGMOG00000018104 I 0.858
ENSLACG00000003485 Latimeria chalumnae ENSLACG00000003485 I 0.858
TCF4 Loxodonta africana ENSLAFG00000013449 I 0.858
ENSLOCG00000003538 Lepisosteus oculatus ENSLOCG00000003538 I 0.858
ENSMEUG00000003794 Macropus eugenii ENSMEUG00000003794 I 0.858
TCF4 Microcebus murinus ENSMICG00000012305 I 0.858
ENSMLUG00000012927 Myotis lucifugus ENSMLUG00000012927 I 0.858
TCF4 Macaca mulatta ENSMMUG00000012001 I 0.858
TCF4 Monodelphis domestica ENSMODG00000020455 I 0.858
ENSMPUG00000016460 Mustela putorius furo ENSMPUG00000016460 I 0.858
Tcf4 Mus musculus ENSMUSG00000053477 D 0.858
ENSNLEG00000007981 Nomascus leucogenys ENSNLEG00000007981 I 0.858
TCF4 Ornithorhynchus anatinus ENSOANG00000003082 I 0.858
ENSOARG00000005018 Ovis aries ENSOARG00000005018 I 0.858
TCF4 Oryctolagus cuniculus ENSOCUG00000002669 I 0.858
ENSOGAG00000005735 Otolemur garnettii ENSOGAG00000005735 I 0.858
ENSONIG00000012720 Oreochromis niloticus ENSONIG00000012720 I 0.858
ENSORLG00000015062 Oryzias latipes ENSORLG00000015062 I 0.858
ENSPFOG00000009937 Poecilia formosa ENSPFOG00000009937 I 0.858
ENSPMAG00000000958 Petromyzon marinus ENSPMAG00000000958 I 0.858
ENSPPYG00000009175 Pongo abelii ENSPPYG00000009175 I 0.858
ENSPSIG00000014469 Pelodiscus sinensis ENSPSIG00000014469 I 0.858
TCF4 Pan troglodytes ENSPTRG00000010040 I 0.858
TCF4 Pteropus vampyrus ENSPVAG00000002074 I 0.858
Tcf4 Rattus norvegicus ENSRNOG00000012405 I 0.858
ENSSHAG00000014955 Sarcophilus harrisii ENSSHAG00000014955 I 0.858
TCF4 Sus scrofa ENSSSCG00000004535 I 0.858
ENSSTOG00000005134 Ictidomys tridecemlineatus ENSSTOG00000005134 I 0.858
TCF4 Tupaia belangeri ENSTBEG00000015498 I 0.858
ENSTSYG00000009542 Tarsius syrichta ENSTSYG00000009542 I 0.858
TCF4 Tursiops truncatus ENSTTRG00000011542 I 0.858
ENSXMAG00000011822 Xiphophorus maculatus ENSXMAG00000011822 I 0.858
Afo_R000660 Aptenodytes forsteri Afo_R000660 I 0.858
Alligator_sinensis_CCG017823.1 Alligator sinensis Alligator_sinensis_CCG017823.1 I 0.858
Cmyd_10020160 Chelonia mydas Cmyd_10020160 I 0.858
ENSP00000381382-D1 Bos grunniens ENSP00000381382-D1 I 0.858
ENSP00000381382 Macaca fascicularis ENSP00000381382 I 0.858
Myotis_brandtii_Tcf4_10017301 Myotis brandtii Myotis_brandtii_Tcf4_10017301 I 0.858
Ogr02020 Ophisaurus gracilis Ogr02020 I 0.858
Pvit_19114 Pogona vitticeps Pvit_19114 I 0.858
tcf4 Xenopus tropicalis XB-GENE-1011628 I 0.858
tcf4.S Xenopus laevis XB-GENE-1011632 I 0.858
EFV53122 Trichinella spiralis EFV53122 I 0.856
D918_01871 Trichuris suis D918_01871 I 0.856
TMUE_s0043005200 Trichuris muris TMUE_s0043005200 I 0.856
TTRE_0000494001 Trichuris trichiura TTRE_0000494001 I 0.856
XP_002153906.1 Hydra magnipapillata XP_002153906.1 I 0.847
AAA92048 Xenopus laevis AAA92048 I 0.840
tcf12 Xenopus laevis XB-GENE-5799694 I 0.840
SPU_016343 Strongylocentrotus purpuratus SPU_016343 I 0.838