CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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Cla022995
(
Citrullus lanatus
)
bHLH
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
PF00010 (HLH)
IPR001092
Cla022995
T047036_2.00
GigaDB (2015-Oct-22)
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
BHLH74
M06720_2.00
Arabidopsis thaliana
SDHSDNDNNCACGTGVNNNNW
WNNNNBCACGTGNNHNHSDHS
Dap-seq
OMalley et al.(2016)
bHLH74_col_a
0.856
0.863
BHLH74
M06721_2.00
Arabidopsis thaliana
CACGTGAY
RTCACGTG
Dap-seq
OMalley et al.(2016)
bHLH74_colamp_a
0.856
0.863
gw1.270.82.1
M01758_2.00
Physcomitrella patens
NCACGTGH
DCACGTGN
PBM
Weirauch et al.(2014)
pTH8457
0.856
0.843
BHLH77
M06736_2.00
Arabidopsis thaliana
NKCACGTGVHNWHNB
VNDWNDBCACGTGMN
Dap-seq
OMalley et al.(2016)
bHLH77_col_a
0.856
0.843
BHLH49
M01052_2.00
Arabidopsis thaliana
NNCACGTGCN
NGCACGTGNN
PBM
Sullivan et al.(2014)
pTH7309
0.844
0.863
PK06517.1
M01122_2.00
Cannabis sativa
NCACGTGC
GCACGTGN
PBM
Lambert et al.(2019)
pTH10104
0.844
0.824
For this family, TFs with SR scores >
0.838
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
Cla022995
bHLH
211
261
ATNNHSLAERVRREKISERMKLLQDLVPGCNQITGRTVVLDEIINYVQSLQ
Links
Other
bHLH
family TFs
Other
Citrullus lanatus
TFs
216 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
Cucsa.395400
Cucumis sativus
Cucsa.395400
I
0.914
VIT_01s0244g00010
Vitis vinifera
VIT_01s0244g00010
I
0.875
Al_scaffold_0003_2564
Arabidopsis lyrata
Al_scaffold_0003_2564
I
0.856
BHLH74
Arabidopsis thaliana
AT1G10120
D
0.856
BHLH77
Arabidopsis thaliana
AT3G23690
D
0.856
Bo1g101470
Brassica oleracea
Bo1g101470
I
0.856
Bo7g039150
Brassica oleracea
Bo7g039150
I
0.856
Bo8g059100
Brassica oleracea
Bo8g059100
I
0.856
Bo8g110780
Brassica oleracea
Bo8g110780
I
0.856
Bra014972
Brassica rapa
Bra014972
I
0.856
Bra018461
Brassica rapa
Bra018461
I
0.856
Bra019962
Brassica rapa
Bra019962
I
0.856
Bra028335
Brassica rapa
Bra028335
I
0.856
Bra031700
Brassica rapa
Bra031700
I
0.856
GLYMA0041S00210
Glycine max
GLYMA0041S00210
I
0.856
GLYMA06G05181
Glycine max
GLYMA06G05181
I
0.856
GLYMA14G10180
Glycine max
GLYMA14G10180
I
0.856
MTR_1g017350
Medicago truncatula
MTR_1g017350
I
0.856
POPTR_0002s11540
Populus trichocarpa
POPTR_0002s11540
I
0.856
POPTR_0005s19020
Populus trichocarpa
POPTR_0005s19020
I
0.856
PRUPE_ppa007762mg
Prunus persica
PRUPE_ppa007762mg
I
0.856
scaffold_101064.1
Arabidopsis lyrata
scaffold_101064.1
I
0.856
TCM_034649
Theobroma cacao
TCM_034649
I
0.856
VIT_18s0001g08600
Vitis vinifera
VIT_18s0001g08600
I
0.856
Ca_09212
Cicer arietinum
Ca_09212
I
0.856
Cla010130
Citrullus lanatus
Cla010130
I
0.856
Pm005441
Prunus mume
Pm005441
I
0.856
30170.m013667
Ricinus communis
30170.m013667
I
0.856
cassava22408.valid.m1
Manihot esculenta
cassava22408.valid.m1
I
0.856
Cucsa.353050
Cucumis sativus
Cucsa.353050
I
0.856
gw1.270.82.1
Physcomitrella patens
gw1.270.82.1
D
0.856
gw1.28.196.1
Physcomitrella patens
gw1.28.196.1
I
0.856
Bostr.13671s0476
Boechera stricta
Bostr.13671s0476
I
0.856
Bostr.19424s0266
Boechera stricta
Bostr.19424s0266
I
0.856
Cagra.0026s0060
Capsella grandiflora
Cagra.0026s0060
I
0.856
Cagra.4395s0200
Capsella grandiflora
Cagra.4395s0200
I
0.856
Carubv10009514m.g
Capsella rubella
Carubv10009514m.g
I
0.856
Carubv10013979m.g
Capsella rubella
Carubv10013979m.g
I
0.856
Ciclev10001249m.g
Citrus clementina
Ciclev10001249m.g
I
0.856
Eucgr.F00100
Eucalyptus grandis
Eucgr.F00100
I
0.856
Eucgr.F02220
Eucalyptus grandis
Eucgr.F02220
I
0.856
evm.TU.supercontig_160.32
Carica papaya
evm.TU.supercontig_160.32
I
0.856
gene02629-v1.0-hybrid
Fragaria vesca
gene02629-v1.0-hybrid
I
0.856
Gorai.010G028200
Gossypium raimondii
Gorai.010G028200
I
0.856
Lus10006491.g
Linum usitatissimum
Lus10006491.g
I
0.856
Lus10012484.g
Linum usitatissimum
Lus10012484.g
I
0.856
MDP0000231650
Malus domestica
MDP0000231650
I
0.856
MDP0000313643
Malus domestica
MDP0000313643
I
0.856
orange1.1g014374m.g
Citrus sinensis
orange1.1g014374m.g
I
0.856
SapurV1A.0004s0280
Salix purpurea
SapurV1A.0004s0280
I
0.856
SapurV1A.0336s0050
Salix purpurea
SapurV1A.0336s0050
I
0.856
Thhalv10002586m.g
Eutrema salsugineum
Thhalv10002586m.g
I
0.856
Thhalv10008002m.g
Eutrema salsugineum
Thhalv10008002m.g
I
0.856
Thhalv10025750m.g
Eutrema salsugineum
Thhalv10025750m.g
I
0.856
PK12518.1
Cannabis sativa
PK12518.1
I
0.856
GSMUA_Achr9G22300_001
Musa acuminata
GSMUA_Achr9G22300_001
I
0.855
TCM_008405
Theobroma cacao
TCM_008405
N
0.855
AMTR_s00006p00257020
Amborella trichopoda
AMTR_s00006p00257020
I
0.844
AMTR_s00013p00245920
Amborella trichopoda
AMTR_s00013p00245920
I
0.844
BHLH76
Arabidopsis thaliana
AT1G26260
I
0.844
BHLH49
Arabidopsis thaliana
AT1G68920
D
0.844
BGIOSGA022687
Oryza indica
BGIOSGA022687
I
0.844
BGIOSGA030954
Oryza indica
BGIOSGA030954
I
0.844
Bo2g062450
Brassica oleracea
Bo2g062450
I
0.844
Bo6g108460
Brassica oleracea
Bo6g108460
I
0.844
Bra004348
Brassica rapa
Bra004348
I
0.844
Bra038336
Brassica rapa
Bra038336
I
0.844
BRADI3G38890
Brachypodium distachyon
BRADI3G38890
I
0.844
BRADI4G32934
Brachypodium distachyon
BRADI4G32934
I
0.844
F775_16858
Aegilops tauschii
F775_16858
I
0.844
CIB5
Arabidopsis lyrata
fgenesh2_kg.1__2745__AT1G26260.3
I
0.844
fgenesh2_kg.2__1151__AT1G68920.3
Arabidopsis lyrata
fgenesh2_kg.2__1151__AT1G68920.3
I
0.844
GLYMA01G09400
Glycine max
GLYMA01G09400
I
0.844
GLYMA02G13860
Glycine max
GLYMA02G13860
I
0.844
GLYMA04G05091
Glycine max
GLYMA04G05091
I
0.844
GRMZM2G080168
Zea mays
GRMZM2G080168
I
0.844
GRMZM2G137541
Zea mays
GRMZM2G137541
I
0.844
GRMZM2G171818
Zea mays
GRMZM2G171818
I
0.844
GRMZM5G818643
Zea mays
GRMZM5G818643
I
0.844
GSMUA_Achr1G19120_001
Musa acuminata
GSMUA_Achr1G19120_001
I
0.844
GSMUA_Achr3G12130_001
Musa acuminata
GSMUA_Achr3G12130_001
I
0.844
GSMUA_Achr3G13490_001
Musa acuminata
GSMUA_Achr3G13490_001
I
0.844
GSMUA_Achr4G16120_001
Musa acuminata
GSMUA_Achr4G16120_001
I
0.844
GSMUA_Achr9G07330_001
Musa acuminata
GSMUA_Achr9G07330_001
I
0.844
GSMUA_Achr9G18510_001
Musa acuminata
GSMUA_Achr9G18510_001
I
0.844
GSMUA_Achr9G28060_001
Musa acuminata
GSMUA_Achr9G28060_001
I
0.844
LPERR06G09390
Leersia perrieri
LPERR06G09390
I
0.844
LPERR09G10040
Leersia perrieri
LPERR09G10040
I
0.844
MLOC_15000
Hordeum vulgare
MLOC_15000
I
0.844
MTR_5g048860
Medicago truncatula
MTR_5g048860
I
0.844
MTR_8g065740
Medicago truncatula
MTR_8g065740
I
0.844
OB06G19820
Oryza brachyantha
OB06G19820
I
0.844
OB09G20330
Oryza brachyantha
OB09G20330
I
0.844
OB11G19520
Oryza brachyantha
OB11G19520
I
0.844
OBART06G10620
Oryza barthii
OBART06G10620
I
0.844
OBART09G13780
Oryza barthii
OBART09G13780
I
0.844
OGLUM09G14350
Oryza glumaepatula
OGLUM09G14350
I
0.844
OGLUM11G11800
Oryza glumaepatula
OGLUM11G11800
I
0.844
OLONG_013606
Oryza longistaminata
OLONG_013606
I
0.844
OLONG_022349
Oryza longistaminata
OLONG_022349
I
0.844
OMERI06G12470
Oryza meridionalis
OMERI06G12470
I
0.844
OMERI11G10380
Oryza meridionalis
OMERI11G10380
I
0.844
ONIVA09G14290
Oryza nivara
ONIVA09G14290
I
0.844
ONIVA11G11880
Oryza nivara
ONIVA11G11880
I
0.844
OPUNC06G10230
Oryza punctata
OPUNC06G10230
I
0.844
OPUNC09G12260
Oryza punctata
OPUNC09G12260
I
0.844
OPUNC11G10440
Oryza punctata
OPUNC11G10440
I
0.844
ORGLA06G0099500
Oryza glaberrima
ORGLA06G0099500
I
0.844
ORGLA06G0299700
Oryza glaberrima
ORGLA06G0299700
I
0.844
ORGLA09G0105100
Oryza glaberrima
ORGLA09G0105100
I
0.844
ORUFI09G14750
Oryza rufipogon
ORUFI09G14750
I
0.844
OS06G0275600
Oryza sativa
OS06G0275600
I
0.844
OS09G0474100
Oryza sativa
OS09G0474100
I
0.844
OS11G0442500
Oryza sativa
OS11G0442500
I
0.844
PGSC0003DMG400001918
Solanum tuberosum
PGSC0003DMG400001918
I
0.844
PGSC0003DMG400004580
Solanum tuberosum
PGSC0003DMG400004580
I
0.844
PGSC0003DMG400008805
Solanum tuberosum
PGSC0003DMG400008805
I
0.844
PGSC0003DMG400016608
Solanum tuberosum
PGSC0003DMG400016608
I
0.844
PGSC0003DMG400019659
Solanum tuberosum
PGSC0003DMG400019659
I
0.844
POPTR_0002s23650
Populus trichocarpa
POPTR_0002s23650
I
0.844
POPTR_0008s11240
Populus trichocarpa
POPTR_0008s11240
I
0.844
POPTR_0010s14600
Populus trichocarpa
POPTR_0010s14600
I
0.844
POPTR_0014s14650
Populus trichocarpa
POPTR_0014s14650
I
0.844
PRUPE_ppa003543mg
Prunus persica
PRUPE_ppa003543mg
I
0.844
PRUPE_ppa003619mg
Prunus persica
PRUPE_ppa003619mg
I
0.844
PRUPE_ppa008085mg
Prunus persica
PRUPE_ppa008085mg
I
0.844
Sb0010s017130
Sorghum bicolor
Sb0010s017130
I
0.844
Sb02g027430
Sorghum bicolor
Sb02g027430
I
0.844
Sb07g028945
Sorghum bicolor
Sb07g028945
I
0.844
SELMODRAFT_106386
Selaginella moellendorffii
SELMODRAFT_106386
I
0.844
SELMODRAFT_439190
Selaginella moellendorffii
SELMODRAFT_439190
I
0.844
SELMODRAFT_72702
Selaginella moellendorffii
SELMODRAFT_72702
I
0.844
SELMODRAFT_72704
Selaginella moellendorffii
SELMODRAFT_72704
I
0.844
Si015793m.g
Setaria italica
Si015793m.g
I
0.844
Si026387m.g
Setaria italica
Si026387m.g
I
0.844
Si029882m.g
Setaria italica
Si029882m.g
I
0.844
Solyc01g010130.2
Solanum lycopersicum
Solyc01g010130.2
I
0.844
Solyc05g010610.2
Solanum lycopersicum
Solyc05g010610.2
I
0.844
Solyc09g097870.2
Solanum lycopersicum
Solyc09g097870.2
I
0.844
Solyc12g098620.1
Solanum lycopersicum
Solyc12g098620.1
I
0.844
TCM_011413
Theobroma cacao
TCM_011413
I
0.844
TCM_020177
Theobroma cacao
TCM_020177
I
0.844
Traes_5BL_71717F042
Triticum aestivum
Traes_5BL_71717F042
I
0.844
Traes_5DL_7A35CD284
Triticum aestivum
Traes_5DL_7A35CD284
I
0.844
TRIUR3_10022
Triticum urartu
TRIUR3_10022
I
0.844
VIT_01s0010g00740
Vitis vinifera
VIT_01s0010g00740
I
0.844
VIT_05s0029g00390
Vitis vinifera
VIT_05s0029g00390
I
0.844
Ca_15961
Cicer arietinum
Ca_15961
I
0.844
Cla005967
Citrullus lanatus
Cla005967
I
0.844
Cla020637
Citrullus lanatus
Cla020637
I
0.844
Pm007777
Prunus mume
Pm007777
I
0.844
Pm024579
Prunus mume
Pm024579
I
0.844
Pm030530
Prunus mume
Pm030530
I
0.844
30138.m003881
Ricinus communis
30138.m003881
I
0.844
30183.m001293
Ricinus communis
30183.m001293
I
0.844
cassava18003.valid.m1
Manihot esculenta
cassava18003.valid.m1
I
0.844
cassava18004.valid.m1
Manihot esculenta
cassava18004.valid.m1
I
0.844
cassava29309.valid.m1
Manihot esculenta
cassava29309.valid.m1
I
0.844
cassava29310.valid.m1
Manihot esculenta
cassava29310.valid.m1
I
0.844
cassava43362.valid.m1
Manihot esculenta
cassava43362.valid.m1
I
0.844
Cucsa.284270
Cucumis sativus
Cucsa.284270
I
0.844
Cucsa.374330
Cucumis sativus
Cucsa.374330
I
0.844
e_gw1.280.47.1
Physcomitrella patens
e_gw1.280.47.1
I
0.844
estExt_fgenesh1_pg.C_3120001
Physcomitrella patens
estExt_fgenesh1_pg.C_3120001
I
0.844
gw1.145.145.1
Physcomitrella patens
gw1.145.145.1
I
0.844
gw1.194.125.1
Physcomitrella patens
gw1.194.125.1
I
0.844
gw1.226.91.1
Physcomitrella patens
gw1.226.91.1
I
0.844
gw1.377.16.1
Physcomitrella patens
gw1.377.16.1
I
0.844
gw1.68.283.1
Physcomitrella patens
gw1.68.283.1
I
0.844
gw1.69.191.1
Physcomitrella patens
gw1.69.191.1
I
0.844
mgf000663m
Mimulus guttatus
mgf000663m
I
0.844
mgf007571m
Mimulus guttatus
mgf007571m
I
0.844
Aquca_002_00983
Aquilegia coerulea
Aquca_002_00983
I
0.844
Aquca_006_00371
Aquilegia coerulea
Aquca_006_00371
I
0.844
Bostr.10273s0474
Boechera stricta
Bostr.10273s0474
I
0.844
Bostr.12659s0370
Boechera stricta
Bostr.12659s0370
I
0.844
Cagra.1157s0017
Capsella grandiflora
Cagra.1157s0017
I
0.844
Cagra.6677s0005
Capsella grandiflora
Cagra.6677s0005
I
0.844
Carubv10009210m.g
Capsella rubella
Carubv10009210m.g
I
0.844
Carubv10020178m.g
Capsella rubella
Carubv10020178m.g
I
0.844
Ciclev10004862m.g
Citrus clementina
Ciclev10004862m.g
I
0.844
Ciclev10031122m.g
Citrus clementina
Ciclev10031122m.g
I
0.844
Eucgr.B03106
Eucalyptus grandis
Eucgr.B03106
I
0.844
evm.TU.supercontig_1.175
Carica papaya
evm.TU.supercontig_1.175
I
0.844
evm.TU.supercontig_157.5
Carica papaya
evm.TU.supercontig_157.5
I
0.844
gene04513-v1.0-hybrid
Fragaria vesca
gene04513-v1.0-hybrid
I
0.844
gene06448-v1.0-hybrid
Fragaria vesca
gene06448-v1.0-hybrid
I
0.844
gene16871-v1.0-hybrid
Fragaria vesca
gene16871-v1.0-hybrid
I
0.844
Gorai.005G022400
Gossypium raimondii
Gorai.005G022400
I
0.844
Gorai.005G148300
Gossypium raimondii
Gorai.005G148300
I
0.844
Gorai.013G098600
Gossypium raimondii
Gorai.013G098600
I
0.844
Lus10013052.g
Linum usitatissimum
Lus10013052.g
I
0.844
Lus10021968.g
Linum usitatissimum
Lus10021968.g
I
0.844
Lus10029110.g
Linum usitatissimum
Lus10029110.g
I
0.844
Lus10030581.g
Linum usitatissimum
Lus10030581.g
I
0.844
Lus10030908.g
Linum usitatissimum
Lus10030908.g
I
0.844
Lus10041261.g
Linum usitatissimum
Lus10041261.g
I
0.844
MDP0000124019
Malus domestica
MDP0000124019
I
0.844
MDP0000154272
Malus domestica
MDP0000154272
I
0.844
MDP0000410728
Malus domestica
MDP0000410728
I
0.844
orange1.1g008631m.g
Citrus sinensis
orange1.1g008631m.g
I
0.844
orange1.1g011621m.g
Citrus sinensis
orange1.1g011621m.g
I
0.844
Pavir.Ba01777
Panicum virgatum
Pavir.Ba01777
I
0.844
Pavir.Bb02517
Panicum virgatum
Pavir.Bb02517
I
0.844
Pavir.Fa00598
Panicum virgatum
Pavir.Fa00598
I
0.844
Pavir.Fb01828
Panicum virgatum
Pavir.Fb01828
I
0.844
Pavir.Ha00788
Panicum virgatum
Pavir.Ha00788
I
0.844
SapurV1A.0060s0600
Salix purpurea
SapurV1A.0060s0600
I
0.844
SapurV1A.0071s0330
Salix purpurea
SapurV1A.0071s0330
I
0.844
SapurV1A.0084s0420
Salix purpurea
SapurV1A.0084s0420
I
0.844
SapurV1A.0570s0150
Salix purpurea
SapurV1A.0570s0150
I
0.844
Thhalv10018444m.g
Eutrema salsugineum
Thhalv10018444m.g
I
0.844
PK06517.1
Cannabis sativa
PK06517.1
D
0.844
PK21234.1
Cannabis sativa
PK21234.1
I
0.844
chr2.CM0124.380.nd
Lotus japonicus
chr2.CM0124.380.nd
I
0.844
PDK_20s1433571g001
Phoenix dactylifera
PDK_20s1433571g001
I
0.844