Carubv10023506m.g (Capsella rubella)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 Carubv10023506m.g T049431_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
Carubv10023506m bHLH 178 229
Carubv10023734m bHLH 120 171

Links

Other bHLH family TFs
Other Capsella rubella TFs

204 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
BHLH70 Arabidopsis thaliana AT2G46810 N 0.914
Bo4g197360 Brassica oleracea Bo4g197360 N 0.914
Bra040483 Brassica rapa Bra040483 N 0.914
Cagra.0050s0019 Capsella grandiflora Cagra.0050s0019 N 0.914
Thhalv10001803m.g Eutrema salsugineum Thhalv10001803m.g N 0.914
Bra004505 Brassica rapa Bra004505 N 0.911
MTR_8g024210 Medicago truncatula MTR_8g024210 N 0.892
cassava39415.m1 Manihot esculenta cassava39415.m1 N 0.892
GSMUA_Achr2G22310_001 Musa acuminata GSMUA_Achr2G22310_001 N 0.889
LPERR05G23220 Leersia perrieri LPERR05G23220 N 0.889
scaffold_403653.1 Arabidopsis lyrata scaffold_403653.1 N 0.884
Bostr.25993s0085 Boechera stricta Bostr.25993s0085 N 0.884
Bo4g006950 Brassica oleracea Bo4g006950 N 0.881
GSMUA_Achr7G21110_001 Musa acuminata GSMUA_Achr7G21110_001 N 0.868
GSMUA_Achr7G21190_001 Musa acuminata GSMUA_Achr7G21190_001 N 0.868
PGSC0003DMG400029634 Solanum tuberosum PGSC0003DMG400029634 N 0.868
Solyc09g091760.1 Solanum lycopersicum Solyc09g091760.1 N 0.868
FMA Vitis vinifera VIT_05s0029g00050 N 0.868
Ca_00615 Cicer arietinum Ca_00615 N 0.868
Cucsa.254010 Cucumis sativus Cucsa.254010 N 0.868
AT1G22490 Arabidopsis thaliana AT1G22490 N 0.864
Bo5g038570 Brassica oleracea Bo5g038570 N 0.864
Bo7g057920 Brassica oleracea Bo7g057920 N 0.864
Bo8g071490 Brassica oleracea Bo8g071490 N 0.864
Bra016377 Brassica rapa Bra016377 N 0.864
Bra040856 Brassica rapa Bra040856 N 0.864
fgenesh1_pg.C_scaffold_1002057 Arabidopsis lyrata fgenesh1_pg.C_scaffold_1002057 N 0.864
GLYMA04G10630 Glycine max GLYMA04G10630 N 0.864
GLYMA06G10470 Glycine max GLYMA06G10470 N 0.864
MTR_3g099620 Medicago truncatula MTR_3g099620 N 0.864
Ca_01453 Cicer arietinum Ca_01453 N 0.864
Cla022458 Citrullus lanatus Cla022458 N 0.864
Cucsa.160250 Cucumis sativus Cucsa.160250 N 0.864
Bostr.12659s0103 Boechera stricta Bostr.12659s0103 N 0.864
Cagra.0114s0053 Capsella grandiflora Cagra.0114s0053 N 0.864
Cagra.10175s0007 Capsella grandiflora Cagra.10175s0007 N 0.864
Carubv10001470m.g Capsella rubella Carubv10001470m.g N 0.864
Carubv10011476m.g Capsella rubella Carubv10011476m.g N 0.864
Lus10000332.g Linum usitatissimum Lus10000332.g N 0.864
Thhalv10009836m.g Eutrema salsugineum Thhalv10009836m.g N 0.864
PK21294.1 Cannabis sativa PK21294.1 N 0.864
PK27921.1 Cannabis sativa PK27921.1 N 0.864
chr1.LjT40H13.220.nd Lotus japonicus chr1.LjT40H13.220.nd N 0.864
GLYMA07G05500 Glycine max GLYMA07G05500 N 0.861
GLYMA16G02020 Glycine max GLYMA16G02020 N 0.861
GSMUA_Achr10G19180_001 Musa acuminata GSMUA_Achr10G19180_001 N 0.861
GSMUA_Achr11G00350_001 Musa acuminata GSMUA_Achr11G00350_001 N 0.861
GSMUA_Achr11G23340_001 Musa acuminata GSMUA_Achr11G23340_001 N 0.861
GSMUA_Achr2G06030_001 Musa acuminata GSMUA_Achr2G06030_001 N 0.861
GSMUA_Achr8G28400_001 Musa acuminata GSMUA_Achr8G28400_001 N 0.861
PRUPE_ppa006041mg Prunus persica PRUPE_ppa006041mg N 0.861
bHLH071 Vitis vinifera VIT_02s0012g01450 N 0.861
VIT_07s0191g00240 Vitis vinifera VIT_07s0191g00240 N 0.861
VIT_15s0048g02510 Vitis vinifera VIT_15s0048g02510 N 0.861
Ca_22410 Cicer arietinum Ca_22410 N 0.861
Pm028748 Prunus mume Pm028748 N 0.861
30076.m004456 Ricinus communis 30076.m004456 N 0.861
cassava29786.valid.m1 Manihot esculenta cassava29786.valid.m1 N 0.861
Ciclev10020360m.g Citrus clementina Ciclev10020360m.g N 0.861
Eucgr.H02788 Eucalyptus grandis Eucgr.H02788 N 0.861
evm.TU.supercontig_57.85 Carica papaya evm.TU.supercontig_57.85 N 0.861
gene18608-v1.0-hybrid Fragaria vesca gene18608-v1.0-hybrid N 0.861
Lus10010101.g Linum usitatissimum Lus10010101.g N 0.861
Lus10012603.g Linum usitatissimum Lus10012603.g N 0.861
MDP0000321049 Malus domestica MDP0000321049 N 0.861
MDP0000829998 Malus domestica MDP0000829998 N 0.861
orange1.1g013752m.g Citrus sinensis orange1.1g013752m.g N 0.861
Pavir.Db01842 Panicum virgatum Pavir.Db01842 N 0.861
PK21055.1 Cannabis sativa PK21055.1 N 0.861
chr3.CM0208.290.nc Lotus japonicus chr3.CM0208.290.nc N 0.861
AC233899.1_FG002 Zea mays AC233899.1_FG002 N 0.858
BGIOSGA005582 Oryza indica BGIOSGA005582 N 0.858
BGIOSGA008846 Oryza indica BGIOSGA008846 N 0.858
BGIOSGA012015 Oryza indica BGIOSGA012015 N 0.858
BGIOSGA017025 Oryza indica BGIOSGA017025 N 0.858
BGIOSGA017471 Oryza indica BGIOSGA017471 N 0.858
BGIOSGA032814 Oryza indica BGIOSGA032814 N 0.858
BRADI1G71990 Brachypodium distachyon BRADI1G71990 N 0.858
BRADI2G22810 Brachypodium distachyon BRADI2G22810 N 0.858
BRADI3G38510 Brachypodium distachyon BRADI3G38510 N 0.858
BRADI3G52150 Brachypodium distachyon BRADI3G52150 N 0.858
BRADI3G58360 Brachypodium distachyon BRADI3G58360 N 0.858
BRADI5G19950 Brachypodium distachyon BRADI5G19950 N 0.858
F775_03517 Aegilops tauschii F775_03517 N 0.858
F775_11253 Aegilops tauschii F775_11253 N 0.858
GRMZM2G008691 Zea mays GRMZM2G008691 N 0.858
GRMZM2G045883 Zea mays GRMZM2G045883 N 0.858
GRMZM2G091003 Zea mays GRMZM2G091003 N 0.858
GRMZM2G111146 Zea mays GRMZM2G111146 N 0.858
GRMZM2G162450 Zea mays GRMZM2G162450 N 0.858
GSMUA_Achr6G10290_001 Musa acuminata GSMUA_Achr6G10290_001 N 0.858
LPERR02G23260 Leersia perrieri LPERR02G23260 N 0.858
LPERR02G27220 Leersia perrieri LPERR02G27220 N 0.858
LPERR03G05820 Leersia perrieri LPERR03G05820 N 0.858
LPERR04G19210 Leersia perrieri LPERR04G19210 N 0.858
LPERR10G05620 Leersia perrieri LPERR10G05620 N 0.858
MLOC_10595 Hordeum vulgare MLOC_10595 N 0.858
MLOC_45114 Hordeum vulgare MLOC_45114 N 0.858
MLOC_60291 Hordeum vulgare MLOC_60291 N 0.858
MLOC_67091 Hordeum vulgare MLOC_67091 N 0.858
MLOC_67417 Hordeum vulgare MLOC_67417 N 0.858
OB02G35790 Oryza brachyantha OB02G35790 N 0.858
OB02G40170 Oryza brachyantha OB02G40170 N 0.858
OB03G16590 Oryza brachyantha OB03G16590 N 0.858
OB04G30380 Oryza brachyantha OB04G30380 N 0.858
OB05G34990 Oryza brachyantha OB05G34990 N 0.858
OB10G16200 Oryza brachyantha OB10G16200 N 0.858
OBART02G28630 Oryza barthii OBART02G28630 N 0.858
OBART02G33270 Oryza barthii OBART02G33270 N 0.858
OBART03G06470 Oryza barthii OBART03G06470 N 0.858
OBART04G23490 Oryza barthii OBART04G23490 N 0.858
OBART05G27490 Oryza barthii OBART05G27490 N 0.858
OBART10G08120 Oryza barthii OBART10G08120 N 0.858
OGLUM02G33770 Oryza glumaepatula OGLUM02G33770 N 0.858
OGLUM03G06480 Oryza glumaepatula OGLUM03G06480 N 0.858
OGLUM04G23410 Oryza glumaepatula OGLUM04G23410 N 0.858
OGLUM05G29000 Oryza glumaepatula OGLUM05G29000 N 0.858
OGLUM10G07850 Oryza glumaepatula OGLUM10G07850 N 0.858
OLONG_001045 Oryza longistaminata OLONG_001045 N 0.858
OLONG_028191 Oryza longistaminata OLONG_028191 N 0.858
OMERI02G31750 Oryza meridionalis OMERI02G31750 N 0.858
OMERI03G01350 Oryza meridionalis OMERI03G01350 N 0.858
OMERI03G06350 Oryza meridionalis OMERI03G06350 N 0.858
OMERI05G23490 Oryza meridionalis OMERI05G23490 N 0.858
ONIVA02G06380 Oryza nivara ONIVA02G06380 N 0.858
ONIVA02G35790 Oryza nivara ONIVA02G35790 N 0.858
ONIVA04G03690 Oryza nivara ONIVA04G03690 N 0.858
ONIVA04G22720 Oryza nivara ONIVA04G22720 N 0.858
ONIVA05G29540 Oryza nivara ONIVA05G29540 N 0.858
ONIVA10G07810 Oryza nivara ONIVA10G07810 N 0.858
OPUNC02G26270 Oryza punctata OPUNC02G26270 N 0.858
OPUNC02G30580 Oryza punctata OPUNC02G30580 N 0.858
OPUNC03G06240 Oryza punctata OPUNC03G06240 N 0.858
OPUNC04G21010 Oryza punctata OPUNC04G21010 N 0.858
OPUNC05G25080 Oryza punctata OPUNC05G25080 N 0.858
OPUNC10G07050 Oryza punctata OPUNC10G07050 N 0.858
ORGLA02G0246400 Oryza glaberrima ORGLA02G0246400 N 0.858
ORGLA02G0287300 Oryza glaberrima ORGLA02G0287300 N 0.858
ORGLA03G0062600 Oryza glaberrima ORGLA03G0062600 N 0.858
ORGLA04G0200200 Oryza glaberrima ORGLA04G0200200 N 0.858
ORGLA05G0238800 Oryza glaberrima ORGLA05G0238800 N 0.858
ORGLA10G0067600 Oryza glaberrima ORGLA10G0067600 N 0.858
ORUFI02G30170 Oryza rufipogon ORUFI02G30170 N 0.858
ORUFI02G34810 Oryza rufipogon ORUFI02G34810 N 0.858
ORUFI03G06370 Oryza rufipogon ORUFI03G06370 N 0.858
ORUFI04G25160 Oryza rufipogon ORUFI04G25160 N 0.858
ORUFI05G29450 Oryza rufipogon ORUFI05G29450 N 0.858
ORUFI10G08570 Oryza rufipogon ORUFI10G08570 N 0.858
OS02G0691500 Oryza sativa OS02G0691500 N 0.858
OS03G0188400 Oryza sativa OS03G0188400 N 0.858
OS05G0586300 Oryza sativa OS05G0586300 N 0.858
OS10G0376900 Oryza sativa OS10G0376900 N 0.858
PGSC0003DMG400016145 Solanum tuberosum PGSC0003DMG400016145 N 0.858
Sb0012s004780 Sorghum bicolor Sb0012s004780 N 0.858
Sb01g044640 Sorghum bicolor Sb01g044640 N 0.858
Sb04g027280 Sorghum bicolor Sb04g027280 N 0.858
Sb04g031250 Sorghum bicolor Sb04g031250 N 0.858
Sb09g030060 Sorghum bicolor Sb09g030060 N 0.858
Si017701m.g Setaria italica Si017701m.g N 0.858
Si017715m.g Setaria italica Si017715m.g N 0.858
Si021834m.g Setaria italica Si021834m.g N 0.858
Si036568m.g Setaria italica Si036568m.g N 0.858
Si038653m.g Setaria italica Si038653m.g N 0.858
Solyc11g010340.1 Solanum lycopersicum Solyc11g010340.1 N 0.858
TCM_001031 Theobroma cacao TCM_001031 N 0.858
TCM_005028 Theobroma cacao TCM_005028 N 0.858
Traes_2BL_E58521BDF Triticum aestivum Traes_2BL_E58521BDF N 0.858
Traes_4AL_EE88645E2 Triticum aestivum Traes_4AL_EE88645E2 N 0.858
Traes_4BL_A48C29364 Triticum aestivum Traes_4BL_A48C29364 N 0.858
Traes_4DL_A76BE77E4 Triticum aestivum Traes_4DL_A76BE77E4 N 0.858
Traes_6DL_882BC1812 Triticum aestivum Traes_6DL_882BC1812 N 0.858
Gorai.003G041800 Gossypium raimondii Gorai.003G041800 N 0.858
Gorai.007G113200 Gossypium raimondii Gorai.007G113200 N 0.858
Gorai.007G113300 Gossypium raimondii Gorai.007G113300 N 0.858
Gorai.007G294800 Gossypium raimondii Gorai.007G294800 N 0.858
Pavir.Aa00538 Panicum virgatum Pavir.Aa00538 N 0.858
Pavir.Ab02502 Panicum virgatum Pavir.Ab02502 N 0.858
Pavir.Ia02758 Panicum virgatum Pavir.Ia02758 N 0.858
Pavir.Ia03109 Panicum virgatum Pavir.Ia03109 N 0.858
Pavir.Ia04907 Panicum virgatum Pavir.Ia04907 N 0.858
Pavir.Ib02778 Panicum virgatum Pavir.Ib02778 N 0.858
Pavir.J03740 Panicum virgatum Pavir.J03740 N 0.858
Pavir.J04021 Panicum virgatum Pavir.J04021 N 0.858
Pavir.J40759 Panicum virgatum Pavir.J40759 N 0.858
Si007984m.g Setaria italica Si007984m.g N 0.857
GSMUA_Achr11G02740_001 Musa acuminata GSMUA_Achr11G02740_001 N 0.856
GSMUA_Achr8G12330_001 Musa acuminata GSMUA_Achr8G12330_001 N 0.856
PGSC0003DMG400017766 Solanum tuberosum PGSC0003DMG400017766 N 0.854
MDP0000229007 Malus domestica MDP0000229007 N 0.854
BHLH67 Arabidopsis thaliana AT3G61950 N 0.850
Bo8g097470 Brassica oleracea Bo8g097470 N 0.850
Bra007644 Brassica rapa Bra007644 N 0.850
fgenesh2_kg.5__2692__AT3G61950.1 Arabidopsis lyrata fgenesh2_kg.5__2692__AT3G61950.1 N 0.850
Bostr.13158s0200 Boechera stricta Bostr.13158s0200 N 0.850
Cagra.0483s0048 Capsella grandiflora Cagra.0483s0048 N 0.850
Carubv10018614m.g Capsella rubella Carubv10018614m.g N 0.850
Thhalv10006045m.g Eutrema salsugineum Thhalv10006045m.g N 0.850
Bo9g055890 Brassica oleracea Bo9g055890 N 0.845
Bra027958 Brassica rapa Bra027958 N 0.845
GRMZM2G086474 Zea mays GRMZM2G086474 N 0.845
Si010485m.g Setaria italica Si010485m.g N 0.845
Pavir.Ga00771 Panicum virgatum Pavir.Ga00771 N 0.845
Pavir.J15346 Panicum virgatum Pavir.J15346 N 0.845