orange1.1g039972m.g (Citrus sinensis)
bHLH

TF Information

Pfam ID Interpro ID Gene ID CIS-BP ID Sequence source
PF00010 (HLH) IPR001092 orange1.1g039972m.g T050611_2.00 JGI:Phytozome (2018-Apr-12)

Directly determined binding motifs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No direct experiments

Motifs from related TFs

Name/Motif ID Species Forward Reverse Type/Study/Study ID SR
Score		 DBD
Identity
No TFs with similar DNA binding domains

DNA Binding Domains

Protein ID Domain From To Sequence
orange1.1g039972m bHLH 35 80

Links

Other bHLH family TFs
Other Citrus sinensis TFs

278 Related TFs

Name Species Gene ID Motif Evidence SR
Score		 Action
Ciclev10013640m.g Citrus clementina Ciclev10013640m.g N 0.914
estExt_fgenesh1_pg.C_550008 Physcomitrella patens estExt_fgenesh1_pg.C_550008 N 0.878
fgenesh1_pg.scaffold_273000011 Physcomitrella patens fgenesh1_pg.scaffold_273000011 N 0.878
gw1.67.189.1 Physcomitrella patens gw1.67.189.1 N 0.878
AMTR_s00021p00146370 Amborella trichopoda AMTR_s00021p00146370 N 0.873
GRMZM2G081816 Zea mays GRMZM2G081816 N 0.867
BGIOSGA000939 Oryza indica BGIOSGA000939 N 0.866
LPERR01G24260 Leersia perrieri LPERR01G24260 N 0.866
OB01G37310 Oryza brachyantha OB01G37310 N 0.866
OBART01G28250 Oryza barthii OBART01G28250 N 0.866
OGLUM01G32180 Oryza glumaepatula OGLUM01G32180 N 0.866
OLONG_008667 Oryza longistaminata OLONG_008667 N 0.866
OMERI05G07470 Oryza meridionalis OMERI05G07470 N 0.866
ONIVA01G32170 Oryza nivara ONIVA01G32170 N 0.866
OPUNC01G28050 Oryza punctata OPUNC01G28050 N 0.866
ORGLA01G0233600 Oryza glaberrima ORGLA01G0233600 N 0.866
ORUFI01G31350 Oryza rufipogon ORUFI01G31350 N 0.866
OS01G0707500 Oryza sativa OS01G0707500 N 0.866
TRAES3BF075800010CFD_g Triticum aestivum TRAES3BF075800010CFD_g N 0.866
TRIUR3_19402 Triticum urartu TRIUR3_19402 N 0.866
AMTR_s00008p00265010 Amborella trichopoda AMTR_s00008p00265010 N 0.858
HEC2 Arabidopsis thaliana AT3G50330 N 0.858
HEC3 Arabidopsis thaliana AT5G09750 N 0.858
HEC1 Arabidopsis thaliana AT5G67060 N 0.858
BGIOSGA026828 Oryza indica BGIOSGA026828 N 0.858
BGIOSGA027780 Oryza indica BGIOSGA027780 N 0.858
BGIOSGA030896 Oryza indica BGIOSGA030896 N 0.858
Bo1g084640 Brassica oleracea Bo1g084640 N 0.858
Bo2g009510 Brassica oleracea Bo2g009510 N 0.858
Bo2g167880 Brassica oleracea Bo2g167880 N 0.858
Bo7g064100 Brassica oleracea Bo7g064100 N 0.858
Bo8g079710 Brassica oleracea Bo8g079710 N 0.858
Bo9g020420 Brassica oleracea Bo9g020420 N 0.858
Bo9g173860 Brassica oleracea Bo9g173860 N 0.858
Bra012128 Brassica rapa Bra012128 N 0.858
Bra028620 Brassica rapa Bra028620 N 0.858
Bra030002 Brassica rapa Bra030002 N 0.858
Bra036071 Brassica rapa Bra036071 N 0.858
Bra036801 Brassica rapa Bra036801 N 0.858
Bra037128 Brassica rapa Bra037128 N 0.858
BRADI3G13300 Brachypodium distachyon BRADI3G13300 N 0.858
BRADI3G38250 Brachypodium distachyon BRADI3G38250 N 0.858
BRADI4G32060 Brachypodium distachyon BRADI4G32060 N 0.858
F775_04427 Aegilops tauschii F775_04427 N 0.858
F775_52433 Aegilops tauschii F775_52433 N 0.858
HEC2 Arabidopsis lyrata fgenesh2_kg.5__1376__AT3G50330.1 N 0.858
HEC3 Arabidopsis lyrata fgenesh2_kg.6__929__AT5G09750.1 N 0.858
HEC1 Arabidopsis lyrata fgenesh2_kg.8__2711__AT5G67060.1 N 0.858
GLYMA01G39360 Glycine max GLYMA01G39360 N 0.858
GLYMA04G04190 Glycine max GLYMA04G04190 N 0.858
GLYMA05G19920 Glycine max GLYMA05G19920 N 0.858
GLYMA06G04380 Glycine max GLYMA06G04380 N 0.858
GLYMA11G05920 Glycine max GLYMA11G05920 N 0.858
GLYMA17G19830 Glycine max GLYMA17G19830 N 0.858
GRMZM2G134735 Zea mays GRMZM2G134735 N 0.858
GRMZM2G354618 Zea mays GRMZM2G354618 N 0.858
GRMZM2G414252 Zea mays GRMZM2G414252 N 0.858
GRMZM2G471635 Zea mays GRMZM2G471635 N 0.858
GRMZM5G812883 Zea mays GRMZM5G812883 N 0.858
GRMZM5G817854 Zea mays GRMZM5G817854 N 0.858
GRMZM5G818776 Zea mays GRMZM5G818776 N 0.858
GSMUA_Achr10G25590_001 Musa acuminata GSMUA_Achr10G25590_001 N 0.858
GSMUA_Achr5G01290_001 Musa acuminata GSMUA_Achr5G01290_001 N 0.858
GSMUA_Achr6G18580_001 Musa acuminata GSMUA_Achr6G18580_001 N 0.858
GSMUA_Achr9G15380_001 Musa acuminata GSMUA_Achr9G15380_001 N 0.858
GSMUA_Achr9G29130_001 Musa acuminata GSMUA_Achr9G29130_001 N 0.858
LPERR08G01030 Leersia perrieri LPERR08G01030 N 0.858
LPERR08G14680 Leersia perrieri LPERR08G14680 N 0.858
LPERR09G09120 Leersia perrieri LPERR09G09120 N 0.858
MLOC_16429 Hordeum vulgare MLOC_16429 N 0.858
MTR_5g017210 Medicago truncatula MTR_5g017210 N 0.858
OB08G10720 Oryza brachyantha OB08G10720 N 0.858
OGLUM08G00660 Oryza glumaepatula OGLUM08G00660 N 0.858
OGLUM08G18600 Oryza glumaepatula OGLUM08G18600 N 0.858
OGLUM09G13100 Oryza glumaepatula OGLUM09G13100 N 0.858
OMERI08G00980 Oryza meridionalis OMERI08G00980 N 0.858
OMERI09G10060 Oryza meridionalis OMERI09G10060 N 0.858
ONIVA03G20840 Oryza nivara ONIVA03G20840 N 0.858
ONIVA08G00590 Oryza nivara ONIVA08G00590 N 0.858
ONIVA08G19790 Oryza nivara ONIVA08G19790 N 0.858
OPUNC08G00600 Oryza punctata OPUNC08G00600 N 0.858
OPUNC08G15570 Oryza punctata OPUNC08G15570 N 0.858
OPUNC09G11020 Oryza punctata OPUNC09G11020 N 0.858
ORGLA08G0155700 Oryza glaberrima ORGLA08G0155700 N 0.858
ORGLA08G0237200 Oryza glaberrima ORGLA08G0237200 N 0.858
ORGLA09G0096500 Oryza glaberrima ORGLA09G0096500 N 0.858
ORUFI08G00650 Oryza rufipogon ORUFI08G00650 N 0.858
ORUFI08G19930 Oryza rufipogon ORUFI08G19930 N 0.858
ORUFI09G13650 Oryza rufipogon ORUFI09G13650 N 0.858
OS08G0108500 Oryza sativa OS08G0108500 N 0.858
OS09G0455300 Oryza sativa OS09G0455300 N 0.858
PGSC0003DMG400007964 Solanum tuberosum PGSC0003DMG400007964 N 0.858
POPTR_0002s12660 Populus trichocarpa POPTR_0002s12660 N 0.858
POPTR_0005s18210 Populus trichocarpa POPTR_0005s18210 N 0.858
POPTR_0007s10950 Populus trichocarpa POPTR_0007s10950 N 0.858
POPTR_0014s02720 Populus trichocarpa POPTR_0014s02720 N 0.858
PRUPE_ppa021226mg Prunus persica PRUPE_ppa021226mg N 0.858
Sb02g026530 Sorghum bicolor Sb02g026530 N 0.858
Sb07g000900 Sorghum bicolor Sb07g000900 N 0.858
Sb07g000910 Sorghum bicolor Sb07g000910 N 0.858
Sb07g022920 Sorghum bicolor Sb07g022920 N 0.858
Si015197m.g Setaria italica Si015197m.g N 0.858
Si015349m.g Setaria italica Si015349m.g N 0.858
Si030966m.g Setaria italica Si030966m.g N 0.858
Solyc04g078790.2 Solanum lycopersicum Solyc04g078790.2 N 0.858
TCM_000632 Theobroma cacao TCM_000632 N 0.858
TCM_033818 Theobroma cacao TCM_033818 N 0.858
Traes_5BL_DDC2491F7 Triticum aestivum Traes_5BL_DDC2491F7 N 0.858
Traes_6AS_C1A37E015 Triticum aestivum Traes_6AS_C1A37E015 N 0.858
Traes_7DL_F43F7A9A3 Triticum aestivum Traes_7DL_F43F7A9A3 N 0.858
TRIUR3_19098 Triticum urartu TRIUR3_19098 N 0.858
VIT_07s0031g00550 Vitis vinifera VIT_07s0031g00550 N 0.858
Ca_01550 Cicer arietinum Ca_01550 N 0.858
Ca_09282 Cicer arietinum Ca_09282 N 0.858
Cla020973 Citrullus lanatus Cla020973 N 0.858
Cla022928 Citrullus lanatus Cla022928 N 0.858
Pm005293 Prunus mume Pm005293 N 0.858
30115.m001220 Ricinus communis 30115.m001220 N 0.858
30170.m013861 Ricinus communis 30170.m013861 N 0.858
cassava41909.m1 Manihot esculenta cassava41909.m1 N 0.858
cassava45275.m1 Manihot esculenta cassava45275.m1 N 0.858
cassava8495.m1 Manihot esculenta cassava8495.m1 N 0.858
Cucsa.352300 Cucumis sativus Cucsa.352300 N 0.858
Cucsa.396050 Cucumis sativus Cucsa.396050 N 0.858
mg018414m Mimulus guttatus mg018414m N 0.858
Aquca_007_00665 Aquilegia coerulea Aquca_007_00665 N 0.858
Bostr.0568s0128 Boechera stricta Bostr.0568s0128 N 0.858
Bostr.13129s0018 Boechera stricta Bostr.13129s0018 N 0.858
Bostr.6864s0212 Boechera stricta Bostr.6864s0212 N 0.858
Cagra.0706s0009 Capsella grandiflora Cagra.0706s0009 N 0.858
Cagra.1085s0086 Capsella grandiflora Cagra.1085s0086 N 0.858
Cagra.2428s0003 Capsella grandiflora Cagra.2428s0003 N 0.858
Carubv10003900m.g Capsella rubella Carubv10003900m.g N 0.858
Carubv10019056m.g Capsella rubella Carubv10019056m.g N 0.858
Carubv10027898m.g Capsella rubella Carubv10027898m.g N 0.858
Ciclev10003815m.g Citrus clementina Ciclev10003815m.g N 0.858
Eucgr.F00216 Eucalyptus grandis Eucgr.F00216 N 0.858
Eucgr.H01682 Eucalyptus grandis Eucgr.H01682 N 0.858
Eucgr.H02048 Eucalyptus grandis Eucgr.H02048 N 0.858
evm.TU.supercontig_49.31 Carica papaya evm.TU.supercontig_49.31 N 0.858
evm.TU.supercontig_55.142 Carica papaya evm.TU.supercontig_55.142 N 0.858
gene09115-v1.0-hybrid Fragaria vesca gene09115-v1.0-hybrid N 0.858
gene23830-v1.0-hybrid Fragaria vesca gene23830-v1.0-hybrid N 0.858
Gorai.003G025300 Gossypium raimondii Gorai.003G025300 N 0.858
Gorai.007G213700 Gossypium raimondii Gorai.007G213700 N 0.858
Gorai.009G212900 Gossypium raimondii Gorai.009G212900 N 0.858
Gorai.010G020500 Gossypium raimondii Gorai.010G020500 N 0.858
Lus10012670.g Linum usitatissimum Lus10012670.g N 0.858
MDP0000123893 Malus domestica MDP0000123893 N 0.858
MDP0000123894 Malus domestica MDP0000123894 N 0.858
MDP0000249405 Malus domestica MDP0000249405 N 0.858
orange1.1g024139m.g Citrus sinensis orange1.1g024139m.g N 0.858
Pavir.Ba02034 Panicum virgatum Pavir.Ba02034 N 0.858
Pavir.Fa00680 Panicum virgatum Pavir.Fa00680 N 0.858
Pavir.Fa02152 Panicum virgatum Pavir.Fa02152 N 0.858
Pavir.J20328 Panicum virgatum Pavir.J20328 N 0.858
Pavir.J21912 Panicum virgatum Pavir.J21912 N 0.858
Pavir.J39499 Panicum virgatum Pavir.J39499 N 0.858
SapurV1A.0167s0080 Salix purpurea SapurV1A.0167s0080 N 0.858
SapurV1A.0423s0010 Salix purpurea SapurV1A.0423s0010 N 0.858
SapurV1A.2123s0040 Salix purpurea SapurV1A.2123s0040 N 0.858
Thhalv10004846m.g Eutrema salsugineum Thhalv10004846m.g N 0.858
Thhalv10011068m.g Eutrema salsugineum Thhalv10011068m.g N 0.858
Thhalv10015330m.g Eutrema salsugineum Thhalv10015330m.g N 0.858
PK01043.1 Cannabis sativa PK01043.1 N 0.858
AT5G01305 Arabidopsis thaliana AT5G01305 N 0.856
GLYMA01G30660 Glycine max GLYMA01G30660 N 0.856
GLYMA03G06792 Glycine max GLYMA03G06792 N 0.856
GSMUA_Achr4G18820_001 Musa acuminata GSMUA_Achr4G18820_001 N 0.856
POPTR_0006s10350 Populus trichocarpa POPTR_0006s10350 N 0.856
POPTR_0016s12830 Populus trichocarpa POPTR_0016s12830 N 0.856
PRUPE_ppa025490mg Prunus persica PRUPE_ppa025490mg N 0.856
TCM_021641 Theobroma cacao TCM_021641 N 0.856
VIT_08s0058g00110 Vitis vinifera VIT_08s0058g00110 N 0.856
Ca_09396 Cicer arietinum Ca_09396 N 0.856
Cla018363 Citrullus lanatus Cla018363 N 0.856
Pm002868 Prunus mume Pm002868 N 0.856
cassava41569.m1 Manihot esculenta cassava41569.m1 N 0.856
Cucsa.130030 Cucumis sativus Cucsa.130030 N 0.856
Aquca_045_00179 Aquilegia coerulea Aquca_045_00179 N 0.856
Bostr.6251s0101 Boechera stricta Bostr.6251s0101 N 0.856
Cagra.4082s0011 Capsella grandiflora Cagra.4082s0011 N 0.856
evm.TU.supercontig_120.27 Carica papaya evm.TU.supercontig_120.27 N 0.856
Gorai.012G117300 Gossypium raimondii Gorai.012G117300 N 0.856
SapurV1A.0001s0420 Salix purpurea SapurV1A.0001s0420 N 0.856
SapurV1A.0905s0090 Salix purpurea SapurV1A.0905s0090 N 0.856
Thhalv10012562m.g Eutrema salsugineum Thhalv10012562m.g N 0.856
LjSGA_012662.1 Lotus japonicus LjSGA_012662.1 N 0.856
IND Arabidopsis thaliana AT4G00120 N 0.855
Bo3g054830 Brassica oleracea Bo3g054830 N 0.855
Bra000979 Brassica rapa Bra000979 N 0.855
IND1 Arabidopsis lyrata fgenesh2_kg.6__3690__AT4G00120.1 N 0.855
GLYMA04G39210 Glycine max GLYMA04G39210 N 0.855
GLYMA05G32410 Glycine max GLYMA05G32410 N 0.855
GLYMA06G15730 Glycine max GLYMA06G15730 N 0.855
GLYMA08G16570 Glycine max GLYMA08G16570 N 0.855
MTR_3g101810 Medicago truncatula MTR_3g101810 N 0.855
MTR_8g093500 Medicago truncatula MTR_8g093500 N 0.855
PGSC0003DMG400028657 Solanum tuberosum PGSC0003DMG400028657 N 0.855
POPTR_0005s06220 Populus trichocarpa POPTR_0005s06220 N 0.855
XM_002310473.1 Populus trichocarpa POPTR_0007s03950 N 0.855
PRUPE_ppa021410mg Prunus persica PRUPE_ppa021410mg N 0.855
PRUPE_ppa022938mg Prunus persica PRUPE_ppa022938mg N 0.855
SELMODRAFT_405220 Selaginella moellendorffii SELMODRAFT_405220 N 0.855
SELMODRAFT_415047 Selaginella moellendorffii SELMODRAFT_415047 N 0.855
Solyc11g005780.1 Solanum lycopersicum Solyc11g005780.1 N 0.855
Solyc12g088790.1 Solanum lycopersicum Solyc12g088790.1 N 0.855
TCM_001435 Theobroma cacao TCM_001435 N 0.855
HEC3 Vitis vinifera VIT_04s0044g01040 N 0.855
VIT_18s0001g10400 Vitis vinifera VIT_18s0001g10400 N 0.855
Ca_02154 Cicer arietinum Ca_02154 N 0.855
Ca_09667 Cicer arietinum Ca_09667 N 0.855
Cla008578 Citrullus lanatus Cla008578 N 0.855
Pm001707 Prunus mume Pm001707 N 0.855
Pm026380 Prunus mume Pm026380 N 0.855
30136.m001043 Ricinus communis 30136.m001043 N 0.855
cassava15224.m1 Manihot esculenta cassava15224.m1 N 0.855
cassava5871.m1 Manihot esculenta cassava5871.m1 N 0.855
Cucsa.101020 Cucumis sativus Cucsa.101020 N 0.855
mgf019142m Mimulus guttatus mgf019142m N 0.855
Aquca_010_00306 Aquilegia coerulea Aquca_010_00306 N 0.855
Aquca_022_00317 Aquilegia coerulea Aquca_022_00317 N 0.855
Bostr.14547s0021 Boechera stricta Bostr.14547s0021 N 0.855
Cagra.1261s0004 Capsella grandiflora Cagra.1261s0004 N 0.855
Carubv10003163m.g Capsella rubella Carubv10003163m.g N 0.855
Eucgr.H04946 Eucalyptus grandis Eucgr.H04946 N 0.855
gene17881-v1.0-hybrid Fragaria vesca gene17881-v1.0-hybrid N 0.855
Gorai.011G116100 Gossypium raimondii Gorai.011G116100 N 0.855
Lus10005710.g Linum usitatissimum Lus10005710.g N 0.855
Lus10042647.g Linum usitatissimum Lus10042647.g N 0.855
MDP0000420192 Malus domestica MDP0000420192 N 0.855
MDP0000711774 Malus domestica MDP0000711774 N 0.855
SapurV1A.0352s0020 Salix purpurea SapurV1A.0352s0020 N 0.855
SapurV1A.0550s0030 Salix purpurea SapurV1A.0550s0030 N 0.855
Thhalv10029526m.g Eutrema salsugineum Thhalv10029526m.g N 0.855
LjSGA_011209.1 Lotus japonicus LjSGA_011209.1 N 0.855
LjT10C23.20.nc Lotus japonicus LjT10C23.20.nc N 0.855
estExt_fgenesh1_pg.C_1630065 Physcomitrella patens estExt_fgenesh1_pg.C_1630065 N 0.854
estExt_fgenesh1_pg.C_480124 Physcomitrella patens estExt_fgenesh1_pg.C_480124 N 0.854
estExt_fgenesh1_pg.C_980121 Physcomitrella patens estExt_fgenesh1_pg.C_980121 N 0.854
BGIOSGA001389 Oryza indica BGIOSGA001389 N 0.847
BRADI2G41390 Brachypodium distachyon BRADI2G41390 N 0.847
LPERR01G17090 Leersia perrieri LPERR01G17090 N 0.847
OBART01G19850 Oryza barthii OBART01G19850 N 0.847
OGLUM01G23470 Oryza glumaepatula OGLUM01G23470 N 0.847
OMERI01G18460 Oryza meridionalis OMERI01G18460 N 0.847
ONIVA01G07440 Oryza nivara ONIVA01G07440 N 0.847
OPUNC01G20250 Oryza punctata OPUNC01G20250 N 0.847
ORGLA01G0163600 Oryza glaberrima ORGLA01G0163600 N 0.847
OS01G0566800 Oryza sativa OS01G0566800 N 0.847
PGSC0003DMG400004039 Solanum tuberosum PGSC0003DMG400004039 N 0.847
Sb03g025570 Sorghum bicolor Sb03g025570 N 0.847
Si003753m.g Setaria italica Si003753m.g N 0.847
Solyc02g090950.1 Solanum lycopersicum Solyc02g090950.1 N 0.847
TRAES3BF276900020CFD_g Triticum aestivum TRAES3BF276900020CFD_g N 0.847
TRIUR3_28638 Triticum urartu TRIUR3_28638 N 0.847
Cla015855 Citrullus lanatus Cla015855 N 0.847
Cucsa.360770 Cucumis sativus Cucsa.360770 N 0.847
Pavir.Ea01618 Panicum virgatum Pavir.Ea01618 N 0.847
Pavir.Eb02113 Panicum virgatum Pavir.Eb02113 N 0.847
GRMZM2G111666 Zea mays GRMZM2G111666 N 0.846
Sb03g032520 Sorghum bicolor Sb03g032520 N 0.846
Si001743m.g Setaria italica Si001743m.g N 0.846
Pavir.Eb02901 Panicum virgatum Pavir.Eb02901 N 0.846
AMTR_s00036p00178030 Amborella trichopoda AMTR_s00036p00178030 N 0.843
GSMUA_Achr7G23410_001 Musa acuminata GSMUA_Achr7G23410_001 N 0.843
GSMUA_Achr8G24970_001 Musa acuminata GSMUA_Achr8G24970_001 N 0.843
POPTR_0001s19250 Populus trichocarpa POPTR_0001s19250 N 0.843
Cla020499 Citrullus lanatus Cla020499 N 0.843
Cucsa.366890 Cucumis sativus Cucsa.366890 N 0.843
Lus10033488.g Linum usitatissimum Lus10033488.g N 0.843
MDP0000178778 Malus domestica MDP0000178778 N 0.843
MDP0000436338 Malus domestica MDP0000436338 N 0.843
SapurV1A.2172s0010 Salix purpurea SapurV1A.2172s0010 N 0.843
chr3.CM1570.150.nc Lotus japonicus chr3.CM1570.150.nc N 0.843
BRADI2G47810 Brachypodium distachyon BRADI2G47810 N 0.842
SapurV1A.0623s0130 Salix purpurea SapurV1A.0623s0130 N 0.842
MTR_7g069590 Medicago truncatula MTR_7g069590 N 0.841