CIS-BP Database: Catalog of Inferred Sequence Binding Preferences
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CBG13188
(
Caenorhabditis briggsae
)
C2H2 ZF
TF Information
Pfam ID
Interpro ID
Gene ID
CIS-BP ID
Sequence source
Animal TF db
PF00096 (zf-C2H2)
IPR007087
CBG13188
T082922_2.00
Ensembl (2018-Dec-8)
Link out
Directly determined binding motifs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
No direct experiments
Motifs from related TFs
Name/Motif ID
Species
Forward
Reverse
Type/Study/Study ID
SR
Score
DBD
Identity
tra-1
M10386_2.00
Caenorhabditis elegans
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
N$TRA1_01
0.824
0.978
tra-1
M10387_2.00
Caenorhabditis elegans
Transfac license required
Transfac license required
Transfac
Matys et al.(2006)
N$TRA1_02
0.824
0.978
For this family, TFs with SR scores >
0.755
will likely have a similar motif
DNA Binding Domains
Protein ID
Domain
From
To
Sequence
CBG13188a
C2H2 ZF
220
246
WRCEWEGCDRNETFKALYMLIVHVRRH
CBG13188a
C2H2 ZF
253
276
KCEYPGCGKEYSRLENLKTHRRTH
CBG13188a
C2H2 ZF
282
307
YKCEFSDCEKAFSNASDRAKHQNRTH
CBG13188a
C2H2 ZF
313
338
YSCQIGGCQKSYTDPSSLRKHIKAVH
CBG13188b
C2H2 ZF
262
288
WRCEWEGCDRNETFKALYMLIVHVRRH
CBG13188b
C2H2 ZF
295
318
KCEYPGCGKEYSRLENLKTHRRTH
CBG13188b
C2H2 ZF
324
349
YKCEFSDCEKAFSNASDRAKHQNRTH
CBG13188b
C2H2 ZF
355
380
YSCQIGGCQKSYTDPSSLRKHIKAVH
Links
Other
C2H2 ZF
family TFs
Other
Caenorhabditis briggsae
TFs
5 Related TFs
Name
Species
Gene ID
Motif Evidence
SR
Score
Action
tra-1
Caenorhabditis elegans
WBGene00006604
D
0.824
CRE04883
Caenorhabditis remanei
CRE04883
I
0.815
CBN25087
Caenorhabditis brenneri
CBN25087
I
0.815
CJA00622
Caenorhabditis japonica
CJA00622
I
0.812